Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54630 167 / 2e-50 C2H2ZnF zinc finger protein-related (.1) AT4G27240 162 / 6e-49 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 137 / 9e-40 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 90 / 7e-22 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G29660 70 / 7e-15 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 60 / 2e-11 unknown protein AT4G22560 58 / 1e-10 unknown protein AT4G12450 54 / 2e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018388 [exp] 274 / 9e-93 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 258 / 1e-83 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10043080 [exp] 165 / 4e-50 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10024333 [exp] 109 / 4e-30 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 97 / 3e-24 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 94 / 3e-23 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 80 / 3e-18 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 76 / 8e-17 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10018219 [exp] 72 / 2e-15 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030800 [exp] 171 / 1e-52 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.011G131300 [exp] 172 / 2e-52 AT5G54630 509 / 3e-179 zinc finger protein-related (.1) Potri.001G415600 [exp] 170 / 6e-52 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.005G238300 [exp] 107 / 4e-28 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.005G173400 [exp] 105 / 2e-27 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 102 / 1e-26 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.002G023200 [exp] 92 / 1e-22 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.009G043900 [exp] 79 / 4e-18 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.001G249900 [exp] 77 / 3e-17 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.001G121600 [exp] 57 / 3e-10 AT4G22560 258 / 5e-86 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018389 pacid=23162138 polypeptide=Lus10018389 locus=Lus10018389.g ID=Lus10018389.BGIv1.0 annot-version=v1.0 ATGACAAATCTCCAGCACGCAGATGGGAACGAGCTGTTGAGGTTCCATGGCACGAATGTATCGTGTCCCCTCGGTTCGTCGTCCTCGTTCGTCCTCTGCA CAATGGAGGATTGCGGAGTATGCCTGATTCTACGAAACGGGTTCTCGAATCGAGAGCTGACGGGAAATGTAGGCGTATTCACCGCTTCAACGAGTAAGAA GGCAATTGAGAAAACTTCTTCGGAAGGTGGTGGAAGGAATGCTTTGGTGCTGTGTAGAGTAATAGCAGGGAGAGTTCATAAGCCGGTTGAGAACATTCAA GAGGTTGTTAACCAGTCCGGGTTCGACTCACTGGCCGGGAAATTCGGCCAGCCTTCGAGTATCGAGGAGCTCTTCCTGCTCGACCCGAAAGCTCTCCTCC CTTGCTTTGTGGTGATTTGTAGACCGTGA
AA sequence Show only first row Show all	>Lus10018389 pacid=23162138 polypeptide=Lus10018389 locus=Lus10018389.g ID=Lus10018389.BGIv1.0 annot-version=v1.0 MTNLQHADGNELLRFHGTNVSCPLGSSSSFVLCTMEDCGVCLILRNGFSNRELTGNVGVFTASTSKKAIEKTSSEGGGRNALVLCRVIAGRVHKPVENIQ EVVNQSGFDSLAGKFGQPSSIEELFLLDPKALLPCFVVICRP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018389 [exp]	0	1
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Lus10018388 [exp]	1.0	0.9464
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10010515 [exp]	5.3	0.9161
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	12.2	0.9076
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Lus10001378 [exp]	13.4	0.8895
AT4G29590			S-adenosyl-L-methionine-depend...		Lus10040550 [exp]	18.1	0.9156
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	19.7	0.8862
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	20.8	0.8622
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	21.6	0.8995
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10019395 [exp]	24.6	0.9005
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Lus10034053 [exp]	27.4	0.8973

Compare expression of checked genes

Lus10018389 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.