Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16730 330 / 4e-107 AtTPS02 terpene synthase 02 (.1) AT4G16740 325 / 1e-104 ATTPS03 terpene synthase 03 (.1.2) AT3G25830 323 / 2e-103 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 323 / 2e-103 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 313 / 1e-99 AtTPS10 terpene synthase 10 (.1) AT3G25810 311 / 8e-99 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61680 239 / 8e-72 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 212 / 3e-61 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 209 / 2e-60 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 207 / 2e-59 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007624 [exp] 954 / 0 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10033643 [exp] 325 / 7e-104 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10039713 [exp] 315 / 5e-100 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018500 [exp] 304 / 2e-96 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 302 / 4e-95 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10025922 [exp] 289 / 3e-90 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10038179 [exp] 288 / 6e-90 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006355 [exp] 285 / 2e-88 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10006356 [exp] 280 / 8e-87 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G031800 [exp] 564 / 0 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 369 / 3e-121 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 365 / 3e-120 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 364 / 2e-119 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.001G308200 [exp] 353 / 4e-115 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 352 / 9e-115 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.017G041700 [exp] 340 / 3e-110 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G022338 [exp] 333 / 2e-107 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G119700 [exp] 307 / 7e-97 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.011G142800 [exp] 298 / 2e-94 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10018390 pacid=23162208 polypeptide=Lus10018390 locus=Lus10018390.g ID=Lus10018390.BGIv1.0 annot-version=v1.0 ATGTATATTAGGCAGTATGGTCATTTACTGGTGGTGAAGCTAAAGGAGGAAGTGAAGATAATCTTTCACGAGGCAACAACCGATTTAACGGCTAAGCTAG AGCTCGTCGACAGGACGAGCAAGCTAGGGCTAGCCGGCTTCTTCGAGGAGGAAATCAAAGAGGCTCTCGATTTCGTGGCCCTGACCGTTCGAGATCGAAG TTTCGTGCTGAGAGAGGATCTGTACCTTTGCGCGTTGTCCTTCAGACTCCTCAGGCAGCATGGTTATCGAGTTTCTCAAGATATGTTCAGCGAGTTTGTG GATGAAACGACTGGCAGTTTCGTCGATAGCAAGTGCACCGAGGATGTTAAGGGACTAGTGGAGTTGTTTGAGGCATCACATTTGGGGTCGGAGACGGAGG ATATTTTGGAGGAAGCGAGTCGATTCTCAACCGAAATCTTGAAGGCCAAGTATCTAAGCTTATGTCAACTTGACAAGAGTACCCTTAGTAGGAGTGTGGC CCACGCTCTTGAGCTCCCCATTCATTGGCGCGTGGGATGGTTTGATGTTAAGTGGCAAATTTCAGCCAATGAGAAAGAGAGGATTAATAATGGACATTAT TATAAGACTTTGATAGACTTGGCAAAAGTCAACTTCAATGTGGTCCAATCCGGACTTCAAAAGGATTTGAAGCAAATATCAAGGTGGTGGAAGGATCTTG ATCTAATTAAGAAGTTACACTTTGCAAGGGATCGAGTCGTCGAAAGCTTTCTATGTGCGGTGGGACTAACAACTAAGCAAGAGCACACCAACTTTAGAAA ACATCTCACAAAAGTAGTCCTCATGATACTAACCATCGACGATGTCTATGATGTTTATGGCTCCCTCGACGAACTAGAACAATTCACCATTGCCATCGAC AAATGGGATGTGAAGGAAGCTGAGAACCTGCCCGAATGTATGAACACATGCTTTCAGTCGCTTCGTGCAATCACCCACGAAATTTCGAGTGAGATCGATA CCGAGAAAGGGTGGAACCGACCCAACCATGTCCATCTTCACCTCCAAAGAGTGTGGGGAGATTTTTGTAAAGCGATGTTGGTAGAAGCAAAGTGGCATAG AGACGGCGAAATGCCGTCGTTGGAAGAGTACTTAAGAAACGGCATCGTTTCGTCGTCCGGCACAGTTCTCGCCGTCCATGCGTTTTACTCTGTGATGGAC AGTGAAACGGCAGGAAAAATGGAAGGGTTTCTGGAGAAGGATGATCATAATCTGATTCACAACGTATGCCTTATAATTCGGCTTTGCAATGATCTTGGAA CTTCAACGGAAGAGCAAGAGAGGGGAGATCAGACGCCATCATCAATAACATGTTACATGAGAGAAGCCAACGTCCCAGAGGAGAAAGCCAGGCTACACAT CAAAGAGATGATCTCCAAAATTTGGAAGAAGATAAATAGCCATCAGCCAAACAATCCAACAAAGTTATTTGTGGACATCAGCATCAACATGGCTCGTGTG GTTCATAGCTTGTACCGACATGGTGATGGCTTCAACGGAAGTCAAGACCGTAAGCAGATATTGTCCCTCTTGGTTCATCCACTCGCACTTTGA
AA sequence Show only first row Show all	>Lus10018390 pacid=23162208 polypeptide=Lus10018390 locus=Lus10018390.g ID=Lus10018390.BGIv1.0 annot-version=v1.0 MYIRQYGHLLVVKLKEEVKIIFHEATTDLTAKLELVDRTSKLGLAGFFEEEIKEALDFVALTVRDRSFVLREDLYLCALSFRLLRQHGYRVSQDMFSEFV DETTGSFVDSKCTEDVKGLVELFEASHLGSETEDILEEASRFSTEILKAKYLSLCQLDKSTLSRSVAHALELPIHWRVGWFDVKWQISANEKERINNGHY YKTLIDLAKVNFNVVQSGLQKDLKQISRWWKDLDLIKKLHFARDRVVESFLCAVGLTTKQEHTNFRKHLTKVVLMILTIDDVYDVYGSLDELEQFTIAID KWDVKEAENLPECMNTCFQSLRAITHEISSEIDTEKGWNRPNHVHLHLQRVWGDFCKAMLVEAKWHRDGEMPSLEEYLRNGIVSSSGTVLAVHAFYSVMD SETAGKMEGFLEKDDHNLIHNVCLIIRLCNDLGTSTEEQERGDQTPSSITCYMREANVPEEKARLHIKEMISKIWKKINSHQPNNPTKLFVDISINMARV VHSLYRHGDGFNGSQDRKQILSLLVHPLAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	0	1
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	1.0	0.9750
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	1.7	0.9455
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	3.5	0.9411
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	4.0	0.9630
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10005417 [exp]	5.2	0.9364
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	5.3	0.9438
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	5.9	0.9423
AT1G18310			glycosyl hydrolase family 81 p...		Lus10038600 [exp]	8.7	0.8818
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10031604 [exp]	9.6	0.8906
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10005716 [exp]	10.7	0.8160

Compare expression of checked genes

Lus10018390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.