Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61690 674 / 0 phosphoinositide binding (.1) AT1G20110 66 / 1e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G43230 55 / 2e-07 RING/FYVE/PHD-type zinc finger family protein (.1) AT3G47660 55 / 3e-07 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G14270 52 / 2e-06 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT5G12350 52 / 2e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 52 / 3e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 51 / 4e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 51 / 5e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G29800 49 / 1e-05 RING/FYVE/PHD-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007623 [exp] 539 / 0 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10017277 [exp] 68 / 3e-11 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013571 [exp] 67 / 6e-11 AT1G20110 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027659 [exp] 59 / 2e-08 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10029271 [exp] 54 / 5e-07 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10007320 [exp] 54 / 6e-07 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10037192 [exp] 54 / 6e-07 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10039922 [exp] 54 / 8e-07 AT3G43230 661 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10005173 [exp] 53 / 1e-06 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032200 [exp] 658 / 0 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.004G030500 [exp] 607 / 0 AT1G61690 634 / 0.0 phosphoinositide binding (.1) Potri.005G242700 [exp] 62 / 1e-09 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G064200 [exp] 62 / 2e-09 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G018900 [exp] 62 / 2e-09 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G135800 [exp] 61 / 3e-09 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.003G072300 [exp] 57 / 1e-07 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.011G071900 [exp] 56 / 1e-07 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.T124906 [exp] 54 / 8e-07 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 54 / 9e-07 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger
Representative CDS sequence Show only first row Show all	>Lus10018391 pacid=23162103 polypeptide=Lus10018391 locus=Lus10018391.g ID=Lus10018391.BGIv1.0 annot-version=v1.0 ATGCTGGAGAAGATCGGATTGCCGCCGAAGCCCTCACTGAGAGGAAACACTTGGGTGGTGGACGCCACGCATTGTCAAGGATGCACTTCTCAGTTCACCT TCATCAATCGCAAGCATCACTGTCGGAGATGCGGCGGTCTCTTCTGCGGAACCTGTACTCAGCAGAGAATGGCACTGAGAGGACAAGGAGATTCTCCCGT ACGAATCTGCGATCCGTGCAAGAAGCTGGAGGAAGCCGCTCGATTCGAGCTCCGTCATGGATATAAGAACAGGACAGCTAAAGCTAGTTCGAAATCGTTA CAGAGAGATGAGGATGAAGTGTTGAATCAGATTCTAGGAGGTGATGGATTTGTGGAATCGAAGCTAAGTAGAGGGAGTAGTAGTAGCAGTGCTTCATGTT CGACTAGGGATAACATGGATCATGGGGGAGAAATGAGTAGAAGCTATTCTGTTGATCATGTTGAGAAGGAATCTTTAGTGACTACTACTCCTGAGGAATT AAGACAGCGGGCAGTGGAGGAGAAAGGGAAGTACAAGACATTGAAAGCGACAGGAAAATCGAACGAGGCGCTGAAGGCGTTTAAACGAGGAAAGGAGCTA GAAAGGCAGGCTGATGCGCTGGAGATAACAATAAGAAGAAACCGCAGGAAGAGCGAGAATCTGAAGAAGGATGTCGTAATGCCTAAAGAGAAGGATAACG ACTTTTTTGCCGAACTCAAGGGCATAGGGTTGTCTGAGATGGATCTGCAAGAGAAAGAGAAGAAGCCGGCGAATTTGAGTTTGGAAGGTGAGTTGTTTTC CCTTCTTGGAGATGTGTCTCAAAGGAAAACTAAAGAAAGTGGAACTGGGTTAGACAAATCTGAGGTGATTGCTCATAAAAGGAAGGCTTTGATGCTGAAG CGAGAAGGAAAGCTTGATGAAGCGAAGCAAGAATTGAAGAAGGCTAAACTGTTGGAGAAGGAGCTTGAAGAGAAGGAGCTGTTTGGAGGTGGAGCTGAAG ATGATTCTGATGATGAGATAGCTGCATTAATCCGTGGCATGGATGGTGGGAAAGAAGAAGATATGCTCTCTGGTTACATGCAGTCAGGAGGACTCGATTT CAATTTTGGTAATCTCGATGATGGTGTGGGATTTGATATTAACGTTGAAGTTACAGACGATGATCTCGTTGACCCGGAAATGGCTGCTACTCTAAAGTCA TTAGGCTGGGCAGATGATTCTGATGTTGGACAGGAACCAGTCTTTGACGATAGGGAAGCGATGCAGAATGAGATTCTCTCCCTCAAACGGGAAGCACTGA GTCAGAAACGGGCAGGTAACACTGCCGAGGCAATGGCGCGGTTAAAGAAGGCCAAGTTACTTGAAAAGAACCTTGAGAGCTTGGCAGGTGAAGAAAACTT GACCCATCCTGAACCCGTTGCAGTTCTTCCGAAAAGTTCAGCTTCCCAACTTAGGAATAAAGCAGGTCCCAAGAATAGAATGATGATTCAGAAGGAGCTT CTGGCGTTAAAAAAGAAGGCGCTTACGCTGAGGAGGGAAGGAAAGTTGGATGAAGCTGATGAGGAACTGCGAAAGGGGAAAGTTCTTGAGCAACAGCTCG AAGAAATGGATGCTTCTGCTTCGAAGGTGCCAGCGCCAAGTATGGACCTTGGTTTGGGAGTTCAGCATTCTGATCCTTTGATTGATTTACATGCCGATGA AGAAGGTGGAGAAGATGAGGATGTAACAGAAGAAGACTTGAGCAACCCAGCTTACCTTTCCCTCCTAAGTAATCTAGGGTGGAAAGACGAAAGCAGTGAA ACGAATTCATCAGTCACTCGAGCAAGGACACCGAATAAAACCAGAGCTGAAATCCAGAGGGAACTTCTGGGACTGAAAAGAAAGGCTCTCACTCTCAGAC GTGAAGGGAAATCTGACGAGGCTGATGATGTACTCAGATCAGCGAAAGAACTCGAGGTCCAGATTGCAGAAATGGACGAACCCAAGAAAGAAGAAACCCG GGTCGAATATTTCAAGGGAGATGAAGCTGAAGCTGCCATTGCAGACGTTAGACCATCTGTACAAGTTGCTCCTGCTCCTGTACATTCTGATAACTTAGCC GAAATCGTATCCTCTTCGCGAAATGCTAGAAGAAGAAGTAAAGGAGAAATCCAAAGAGAGCTCCTAGGCATCAAGAGAAAAGCATTAGCCCTCAGACGTC AAGGAGAAACTGAAGAGGCCGATGAACTGCTGAAAATGGCCAAGATGCTGGAGGCTGACCTCGTAGAACTCGATGGCTCAAGAGAAGAGCAGCCCCCTAC TGAAGTATTCGAAACTCCAAAGCCGTTGATCGAGCGTAATGAGCAAGCGAATGTGAAGGTAGCTGGCCCGAGCGATGCAGTTGTTGTATCGTTAACAAGC CTTGGAGAGCAAGCTTCGTCGGGAGAGGCAGGAACTGCCGCAGGCAGAGGAAGCCATACCTCTGTTCTCCCACCACCTCAGCTTTCCGAGGATCATCGGA CAGATACAATGTCAGTCAATGAGCGGGGTGAATGGACTGATGGTAGTCATGCATCGGGTTCCGAGTCAGTGCAGCAACAGGTTTTAGCTCGGAAGAGGAG AGCGCTTGCTCTCAAAAGAGAAGGCAAGCTAGCCGAGGCACGGGACGAGCTAAGGCAAGCCAAGCTGCTGGAGAAGACCCTTGAGAACGAGTCTTCTCCC AGTCCGGAAACTCGTAAACAGAACCACGATGAATCGAGTCCCCCTCCTGCTAAAAAAAAAGAATCACCACCACTCATTGAATCATCACCACCAAACGCAG CCGCAGCACCAAAAATGTCTGGACGCGATCGGTTCAAGCTACAGCAGGAGTGCCTCAGCCACAAACGGCAAGCAATGAAGCTACGGAGAGAAGGCCGAAC GGCAGAAGCAGATGCCGAGTTCGAGCTTGCCAAGTCCCTCGAAGCACAGCTGGACGCCGCTTCTCCCGAAAAACAAAACGGTGGCGGTAAGGATGATGCT GCTGGAGTTGTCGAGGATCTCCTCGATCCTCAACTTCTAGCTGCATTACGAGCGATCGGGATCGACAGTGGCTCTGGCTCCACCACCAATGCGGCTTCCC AGGCTCTTGCGAAGCCTGAAGAAGAAACGGCCAGCAGGGTTAGTCCGGAGGACGAGCGGAGGGAGCTGGAGGACCGGATTAAGGCGGAGAAAGTGAAAGC TGTGAACTTGAAGCGTGCTGGGAAGCAAGCTGAGGCAGTTGATGCCCTTCGTCGGGCTAAGATGTATGAGAAGAGGCTTAGTTCGTTGGGTTGA
AA sequence Show only first row Show all	>Lus10018391 pacid=23162103 polypeptide=Lus10018391 locus=Lus10018391.g ID=Lus10018391.BGIv1.0 annot-version=v1.0 MLEKIGLPPKPSLRGNTWVVDATHCQGCTSQFTFINRKHHCRRCGGLFCGTCTQQRMALRGQGDSPVRICDPCKKLEEAARFELRHGYKNRTAKASSKSL QRDEDEVLNQILGGDGFVESKLSRGSSSSSASCSTRDNMDHGGEMSRSYSVDHVEKESLVTTTPEELRQRAVEEKGKYKTLKATGKSNEALKAFKRGKEL ERQADALEITIRRNRRKSENLKKDVVMPKEKDNDFFAELKGIGLSEMDLQEKEKKPANLSLEGELFSLLGDVSQRKTKESGTGLDKSEVIAHKRKALMLK REGKLDEAKQELKKAKLLEKELEEKELFGGGAEDDSDDEIAALIRGMDGGKEEDMLSGYMQSGGLDFNFGNLDDGVGFDINVEVTDDDLVDPEMAATLKS LGWADDSDVGQEPVFDDREAMQNEILSLKREALSQKRAGNTAEAMARLKKAKLLEKNLESLAGEENLTHPEPVAVLPKSSASQLRNKAGPKNRMMIQKEL LALKKKALTLRREGKLDEADEELRKGKVLEQQLEEMDASASKVPAPSMDLGLGVQHSDPLIDLHADEEGGEDEDVTEEDLSNPAYLSLLSNLGWKDESSE TNSSVTRARTPNKTRAEIQRELLGLKRKALTLRREGKSDEADDVLRSAKELEVQIAEMDEPKKEETRVEYFKGDEAEAAIADVRPSVQVAPAPVHSDNLA EIVSSSRNARRRSKGEIQRELLGIKRKALALRRQGETEEADELLKMAKMLEADLVELDGSREEQPPTEVFETPKPLIERNEQANVKVAGPSDAVVVSLTS LGEQASSGEAGTAAGRGSHTSVLPPPQLSEDHRTDTMSVNERGEWTDGSHASGSESVQQQVLARKRRALALKREGKLAEARDELRQAKLLEKTLENESSP SPETRKQNHDESSPPPAKKKESPPLIESSPPNAAAAPKMSGRDRFKLQQECLSHKRQAMKLRREGRTAEADAEFELAKSLEAQLDAASPEKQNGGGKDDA AGVVEDLLDPQLLAALRAIGIDSGSGSTTNAASQALAKPEEETASRVSPEDERRELEDRIKAEKVKAVNLKRAGKQAEAVDALRRAKMYEKRLSSLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61690			phosphoinositide binding (.1)		Lus10018391 [exp]	0	1
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	1.4	0.8811
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	1.7	0.9069
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Lus10034470 [exp]	3.0	0.8781
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10033657 [exp]	4.4	0.8352
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	9.0	0.8607
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10006321 [exp]	9.5	0.8447
AT3G58050			unknown protein		Lus10021073 [exp]	10.6	0.8667
AT2G46900			unknown protein		Lus10036338 [exp]	11.0	0.8433
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10029591 [exp]	11.1	0.8717
AT2G05710		ACO3	aconitase 3 (.1)		Lus10039678 [exp]	11.5	0.8150

Compare expression of checked genes

Lus10018391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.