Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61680 327 / 2e-104 ATTPS14 terpene synthase 14 (.1.2) AT4G16730 278 / 5e-86 AtTPS02 terpene synthase 02 (.1) AT4G16740 265 / 5e-81 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 261 / 5e-79 AtTPS10 terpene synthase 10 (.1) AT3G25830 248 / 2e-74 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 248 / 2e-74 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25810 245 / 5e-73 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 219 / 5e-64 ATTPS21 terpene synthase 21 (.1.2) AT1G33750 157 / 6e-41 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 156 / 1e-40 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018280 [exp] 588 / 0 AT5G45170 410 / 1e-136 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10035240 [exp] 587 / 0 AT1G61680 372 / 5e-123 terpene synthase 14 (.1.2) Lus10000231 [exp] 571 / 0 AT1G61680 348 / 8e-115 terpene synthase 14 (.1.2) Lus10007622 [exp] 550 / 0 AT4G16740 191 / 7e-58 terpene synthase 03 (.1.2) Lus10007624 [exp] 246 / 5e-74 AT4G16740 334 / 8e-108 terpene synthase 03 (.1.2) Lus10018390 [exp] 241 / 4e-72 AT4G16730 330 / 5e-107 terpene synthase 02 (.1) Lus10018500 [exp] 241 / 8e-72 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10018501 [exp] 241 / 2e-71 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10012312 [exp] 239 / 1e-70 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G030200 [exp] 396 / 5e-132 AT1G61680 465 / 2e-159 terpene synthase 14 (.1.2) Potri.004G030400 [exp] 394 / 3e-131 AT1G61680 466 / 8e-160 terpene synthase 14 (.1.2) Potri.011G032300 [exp] 327 / 4e-106 AT1G61680 350 / 1e-115 terpene synthase 14 (.1.2) Potri.015G085500 [exp] 282 / 2e-87 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 277 / 1e-85 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.007G119700 [exp] 279 / 2e-85 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 273 / 1e-83 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 269 / 9e-83 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 263 / 5e-80 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.019G022338 [exp] 258 / 4e-78 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10018392 pacid=23162225 polypeptide=Lus10018392 locus=Lus10018392.g ID=Lus10018392.BGIv1.0 annot-version=v1.0 ATGGCAACTTCCTCTTACTGTTCTTTTTCTTCTTCCTCTTCCTTCCCCGGAATCACTAATCGTTCCGATGAACTAACCAGTAATCCCCCGTGGCGACCGT CGCCGCCACAGTTGGTCACTAACTTCAAGGGATACATGACGTTATCATCGCCGCCGGGAGCTTTCAAGCATGCCATTCTCCTACATCGACATGCACGACC TGGCGTTACGACGTCGCACAGCCGCCGCCATGTTTATGATGAGAATATCCTGACGGAGATGCGTGCACATAGACTTGAAGAAGCAAGGTTGATGTTCATG AAGCAAAAGGAAGAACAGAACTCCATGGTAATGATTGATGCCCTTCAACGCCTAGGCTTAGACTACCACTTCGAGCAAGACATAGCCATGGTCTTGGAGG AGCTTTACAATGACCAAATGACGGCGTCGCCGACATTATCCTCCGCAGCCGGCGCCGACCTTTTCCACACGTCGTTGGGATTTCGGTTGTTAAGACAACA TGGTTATAATGTTCCTTCAGATGTGTTTCGCAAATTCACAAACGAGGAAGGACGTCGAAAGGTCATGGGAGGCAACGATACGAGGGGACTGATCGAACTG TATGAAGCATCGTTCTGGGGCACGAAAGGCGAGAATGCTCTCTTTGAGGGTGGGGAACTCAGTGCTCGAATGCTATCGGGACGAGGTTCGAGCAATCTCA ATGCGGATTTCACACTAAGACATCCTCTTCATAGAAGCTTACCTAAATTCAACATGAAGAACTACCTCAACATCTTCAATAATGGCCATGGCTGCTACAA TGATGCTCTTGCTGATCTAGCGAGGTTGGACTTCAATGTCAACCAGTCAACTCACAAGGAAGAAGTCATCCAAGTTTCGAGGTGGTGGAAAGAAGTGGGG CTCGCAGAAGAGCTAAAGTTTGCCAGGAACCAACCGTTGAAGTTCTACATGTGGTCCCTGGCAACCTTGCCGGAACCCAAATTCTCAGGAGACAGAGTCG AGATGACGAAACCTGCTTCGTTTGTGTACCTCATAGACGACATCTTCGACATTTACGGGTCGCTTGATGAACTAGTTCTCTTCACTGAAATCGTTGACAG ATGGGACATCGCAGCCGCAGAACATCTTCCCAATTACATGAGGAAATGCTTCGTGGCACTCAATGAATTCACGAACCAATTCGGTTACAAAGTGTATGAA AGACATGGGTTGAACCCTGTCCACTACCTACAACGAGCATGGGCAAAAATGATCAAAGCATTCTTAGTGGAAGCCAAGTGGTTCAAGTCAAGAGGGTGTC TTCCAAAGGCAAATGAGTACTTGGAAAATGGGATAGTTAGTTCAAGTGTCCAACTAGTGTTGGTTCACCTCTTCTTTCTTTTGGGTCATGACCTAACTCA AAGAAACTTGGACCTCGTCAACGGCGATAACCCTCCGATATTGTCTCCTGTCGCGAAAATTTTCCGGCTCTGTGACGACCTCTCTGCCATGAATGAGGAA CGAAATGGGTGTGATGGATCGTATGTGGATTACTACATGAAGGAGCATCCAGAGTCGTCTACGCACGATGCGAGGATGCATGTGATGGAGATGATTGAGG ATGCTTGGAAGCAATTCAACGGCGAATGTCTTTCTTCTTCGACAAGGCTCCCATCGTTGTTGATTAGGGTTGCTCATAACTCGGCGAAAATGGTTTCCTT GATGGAACATGTTAGTGACGATGGTGAAACCCCTTCGAGCCTAGAGGATCATATCAAGTCCATGCTCTTTGAAAGCATACCCATTTAG
AA sequence Show only first row Show all	>Lus10018392 pacid=23162225 polypeptide=Lus10018392 locus=Lus10018392.g ID=Lus10018392.BGIv1.0 annot-version=v1.0 MATSSYCSFSSSSSFPGITNRSDELTSNPPWRPSPPQLVTNFKGYMTLSSPPGAFKHAILLHRHARPGVTTSHSRRHVYDENILTEMRAHRLEEARLMFM KQKEEQNSMVMIDALQRLGLDYHFEQDIAMVLEELYNDQMTASPTLSSAAGADLFHTSLGFRLLRQHGYNVPSDVFRKFTNEEGRRKVMGGNDTRGLIEL YEASFWGTKGENALFEGGELSARMLSGRGSSNLNADFTLRHPLHRSLPKFNMKNYLNIFNNGHGCYNDALADLARLDFNVNQSTHKEEVIQVSRWWKEVG LAEELKFARNQPLKFYMWSLATLPEPKFSGDRVEMTKPASFVYLIDDIFDIYGSLDELVLFTEIVDRWDIAAAEHLPNYMRKCFVALNEFTNQFGYKVYE RHGLNPVHYLQRAWAKMIKAFLVEAKWFKSRGCLPKANEYLENGIVSSSVQLVLVHLFFLLGHDLTQRNLDLVNGDNPPILSPVAKIFRLCDDLSAMNEE RNGCDGSYVDYYMKEHPESSTHDARMHVMEMIEDAWKQFNGECLSSSTRLPSLLIRVAHNSAKMVSLMEHVSDDGETPSSLEDHIKSMLFESIPI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61680		ATTPS14	terpene synthase 14 (.1.2)		Lus10018392 [exp]	0	1
					Lus10026092 [exp]	1.4	0.9309
AT3G50740		UGT72E1	UDP-glucosyl transferase 72E1 ...		Lus10041715 [exp]	2.4	0.8876
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Lus10039364 [exp]	3.2	0.9176
AT1G47670			Transmembrane amino acid trans...		Lus10003339 [exp]	3.5	0.9141
AT5G49130			MATE efflux family protein (.1...		Lus10009788 [exp]	4.5	0.9049
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10026112 [exp]	4.5	0.9013
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10008708 [exp]	6.2	0.8170
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10033054 [exp]	7.3	0.8186
AT4G24780			Pectin lyase-like superfamily ...		Lus10013666 [exp]	9.8	0.8663
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10006308 [exp]	11.5	0.8754

Compare expression of checked genes

Lus10018392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.