Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21330 131 / 1e-37 bHLH bHLH022, DYT1 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 90 / 2e-20 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 80 / 6e-17 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G12860 77 / 5e-16 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 74 / 2e-15 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G29930 71 / 2e-14 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G17880 69 / 5e-13 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G10610 67 / 1e-12 bHLH bHLH090 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G28160 66 / 2e-12 bHLH ATFIT1, ATBHLH29, bHLH029, FIT1, ATBHLH029, FRU ARABIDOPSIS FE-DEFICIENCY INDUCED TRANSCRIPTION FACTOR 1, BASIC HELIX-LOOP-HELIX PROTEIN 29, FER-like regulator of iron uptake (.1) AT5G46760 66 / 5e-12 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007618 [exp] 313 / 2e-109 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10020074 [exp] 182 / 1e-57 AT4G21330 116 / 3e-32 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030880 [exp] 80 / 5e-17 AT2G16910 224 / 7e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10030609 [exp] 80 / 7e-17 AT2G16910 239 / 1e-74 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026278 [exp] 74 / 1e-14 AT2G16910 233 / 2e-69 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042395 [exp] 71 / 7e-14 AT2G16910 323 / 1e-103 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10032542 [exp] 71 / 9e-14 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10043199 [exp] 71 / 9e-14 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10006951 [exp] 69 / 1e-13 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029800 [exp] 159 / 2e-48 AT4G21330 153 / 8e-47 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G136300 [exp] 96 / 1e-22 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 82 / 8e-18 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 77 / 2e-17 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G106000 [exp] 77 / 6e-16 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.006G074900 [exp] 74 / 1e-15 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.015G105200 [exp] 75 / 3e-15 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.018G141800 [exp] 73 / 4e-15 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G176900 [exp] 70 / 1e-13 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.006G074700 [exp] 69 / 1e-13 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018395 pacid=23162126 polypeptide=Lus10018395 locus=Lus10018395.g ID=Lus10018395.BGIv1.0 annot-version=v1.0 ATGGAGGGACAGAGCAGCAGGAAGAGAAGAACACCACTAAAGTCGGACAAAACAGGATGCAAATCGAAGAACCTCTTCGCAGAGAGAAGACGGAGGGAGA AGCTCAACGATCGCCTCCACTTGCTCCGCGCTTCGGTCCCCAATATCACCAATATGACCAAGGCGACCATTATAGACGATGCAATTGATTACATTCAGGA CCTGATGAGGAATGTCGAGCTTCTCAGCGGCCAGCTAGAGCGATTTTCGGCTGATTCAACACCCGATGAGGTTCGTGATGCTGCTGAGGAGATGACACAT TGTGAGATTCAGGAAGAAGTGGAGGTGGTTAGGATCGACGGGAAGAAGCTATGGGTGAAGATTGTGCTGGAGAAGAGGAAAGGAAGGTTCACTAAGCTGA TTGAAGCAATGACCACGCTAGGGTTTCAGCCTGTTCATACAAGCTTGACCACTTCCAAAGGAGCATTCCTCATTTCATCTTGTGTTGAGCCACAAGCTAC AACATTGAGTCCAAACCAATATGAAATGGATCACTTCTATCTCGCTTGCATTCTGTTCTTAGCTCATCTCTTCGAGCCGGGACTAACTCAGAGTCATCTG AGTCAGCCCCCAGCTTCAAGTCCAGCTCCAGCAGTAGCAGGAAACGGGTTCGTAGTCTCCGGAGCTCCCCCCGGGACCGGGACCAGGAGGGTAACTAGGC ATCATAAAGATGGATCGGCGGGGGGGGGGGGGGGGGGGCGGTAG
AA sequence Show only first row Show all	>Lus10018395 pacid=23162126 polypeptide=Lus10018395 locus=Lus10018395.g ID=Lus10018395.BGIv1.0 annot-version=v1.0 MEGQSSRKRRTPLKSDKTGCKSKNLFAERRRREKLNDRLHLLRASVPNITNMTKATIIDDAIDYIQDLMRNVELLSGQLERFSADSTPDEVRDAAEEMTH CEIQEEVEVVRIDGKKLWVKIVLEKRKGRFTKLIEAMTTLGFQPVHTSLTTSKGAFLISSCVEPQATTLSPNQYEMDHFYLACILFLAHLFEPGLTQSHL SQPPASSPAPAVAGNGFVVSGAPPGTGTRRVTRHHKDGSAGGGGGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21330	bHLH	bHLH022, DYT1	DYSFUNCTIONAL TAPETUM 1, basic...		Lus10018395 [exp]	0	1
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10032683 [exp]	5.9	0.8383
					Lus10021407 [exp]	8.6	0.8076
AT2G47190	MYB	AtMYB2	myb domain protein 2 (.1)		Lus10009996 [exp]	11.9	0.8011
AT3G49780		ATPSK3(FORMERSY...	phytosulfokine 4 precursor (.1...		Lus10011721 [exp]	13.0	0.7934
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10030020 [exp]	15.2	0.7964
AT5G22860			Serine carboxypeptidase S28 fa...		Lus10005354 [exp]	16.4	0.7856
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	18.9	0.7840
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	20.0	0.7806
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017345 [exp]	20.3	0.7792
					Lus10019796 [exp]	23.5	0.7382

Compare expression of checked genes

Lus10018395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.