Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61667 162 / 1e-51 Protein of unknown function, DUF538 (.1) AT5G54530 150 / 7e-47 Protein of unknown function, DUF538 (.1) AT5G16380 100 / 1e-26 Protein of unknown function, DUF538 (.1) AT3G07470 96 / 1e-25 Protein of unknown function, DUF538 (.1) AT3G07460 89 / 8e-23 Protein of unknown function, DUF538 (.1.2) AT1G55265 84 / 1e-20 Protein of unknown function, DUF538 (.1) AT2G03350 50 / 8e-08 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007617 [exp] 249 / 8e-86 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10020075 [exp] 191 / 7e-63 AT1G61667 178 / 6e-58 Protein of unknown function, DUF538 (.1) Lus10006749 [exp] 174 / 3e-56 AT1G61667 171 / 2e-55 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 101 / 1e-27 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 100 / 7e-27 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 99 / 1e-26 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 100 / 2e-26 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 100 / 2e-26 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 98 / 1e-25 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032600 [exp] 170 / 1e-54 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 161 / 2e-51 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 157 / 2e-49 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 154 / 2e-48 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 107 / 5e-30 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 107 / 8e-30 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 88 / 1e-22 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 85 / 2e-21 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 81 / 1e-19 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 80 / 3e-19 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10018396 pacid=23162168 polypeptide=Lus10018396 locus=Lus10018396.g ID=Lus10018396.BGIv1.0 annot-version=v1.0 ATGGCATCCATCATAATCTTCTCCGTCTCCCTCCTCCTCATCCTCTTCGCCCCTTCCTCCGCCGTCGCCGGCGACAAATCCTCCTCCCTGCAGAAGCTCC TCCACAGCCAGGGCCTCCCCGGCGGGCTCTTCCCGGAGAATGTCAAGTCGTTCGATCTTGACTCCAACGGCAAGCTAGAAGTCCAGCTGGAAGGCCCCTG TTTAGCAAAATTCGAAAACAGAGTCTTCTTTGAGTCCCACCTCAGAGCCAATCTCAGCTTCGGCGGCCTCGTCGGAATGGAAGGTCTCACCCAGGAGGAG CTCTTCCTTTGGTTCCCCGTCAAAGGAATCTTCGTGAAAGATCCCAATTCAGGTGTCATACTTTTCGATATTGGCCTTGCTCACAAATCTCTCTCTGTTT CTCTGTTTGAAGATCCCCCCTCTTGCAAGGCTGAAGGTGGGTTGGTGAAGCAGAGCAGAGGGACTATTGGATTTGCAGCTGAGAGGTGA
AA sequence Show only first row Show all	>Lus10018396 pacid=23162168 polypeptide=Lus10018396 locus=Lus10018396.g ID=Lus10018396.BGIv1.0 annot-version=v1.0 MASIIIFSVSLLLILFAPSSAVAGDKSSSLQKLLHSQGLPGGLFPENVKSFDLDSNGKLEVQLEGPCLAKFENRVFFESHLRANLSFGGLVGMEGLTQEE LFLWFPVKGIFVKDPNSGVILFDIGLAHKSLSVSLFEDPPSCKAEGGLVKQSRGTIGFAAER

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61667			Protein of unknown function, D...		Lus10018396 [exp]	0	1
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10002181 [exp]	3.2	0.8864
AT3G06145			unknown protein		Lus10034029 [exp]	6.9	0.8628
AT4G22730			Leucine-rich repeat protein ki...		Lus10004333 [exp]	8.5	0.8693
AT1G61667			Protein of unknown function, D...		Lus10007617 [exp]	8.8	0.8283
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	11.4	0.8687
AT1G09812			unknown protein		Lus10037361 [exp]	11.7	0.8815
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	12.5	0.8734
AT1G51630			O-fucosyltransferase family pr...		Lus10035749 [exp]	13.0	0.8809
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10037588 [exp]	13.6	0.8799
AT2G20840			Secretory carrier membrane pro...		Lus10039794 [exp]	19.9	0.8746

Compare expression of checked genes

Lus10018396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.