Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11440 54 / 3e-08 unknown protein AT3G29075 50 / 5e-07 glycine-rich protein (.1) AT5G39570 46 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007616 [exp] 357 / 4e-125 AT1G11440 100 / 2e-24 unknown protein Lus10029322 [exp] 58 / 2e-09 AT5G39570 144 / 2e-40 unknown protein Lus10001317 [exp] 55 / 3e-08 AT1G13120 481 / 1e-162 embryo defective 1745 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032700 [exp] 108 / 3e-27 AT1G11440 71 / 1e-13 unknown protein Potri.004G029500 [exp] 69 / 9e-14 AT1G11440 68 / 2e-13 unknown protein Potri.017G087200 [exp] 57 / 6e-09 AT5G39570 112 / 3e-27 unknown protein Potri.004G127400 [exp] 52 / 2e-07 AT5G39570 139 / 4e-37 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018397 pacid=23162131 polypeptide=Lus10018397 locus=Lus10018397.g ID=Lus10018397.BGIv1.0 annot-version=v1.0 ATGCAGTTGATCTACGGCGACGCAATTGCCTACAATTACTACGGCGGCGGCGCACCGTACAGCTACAATTACTACGCCGCCAGTGATTACTCTTACTCCC ATCATCACTGCTACGATTCAGCTTCTTATCTCTATGGATCGGGAGCTACTAATTACAATTACTACGCCTATGAACAATTACCGAGTCTGACTCACTACGC CGAATCCAACCCAACTCAGTCGATTGCTCTGTTGGAGTTCAACGAGACCGATTTCGAAGAGTACGATTCCACCCCTTACGGCGGCGGCTACGACCTCGCT CAAACTTACGGCAATCCGCTTCCCCAGTCCGATCAAACCTGCTACCCACGTTCCACGGCAGTGAATATAATCCCATCCGCCGTCATCGCCGCTACCACAA TTTTATCAGCTCCACAGGTAGAAATTCGTAAACCGAATGAGCCGAAAATCGAGGAGTCGAAGCCGAAGGAGATGGAGATGATCGAGGAATTGGAAGCGGT GAAGGAGGAAGCGGATGTTAAAGAGGACGGGTACGAGTACGGTTACGGTGGAAGCGGGTATGCGGGTCGGGTGCCGTCGGGTTACGGGTTGGAAGCGGTG GATTTGTGCGAGAGTTTGTTCGGGTACTGGCCGTGTTTGGAGAAGAGTAGAAGGGAGAGTGAGGGTTATGTGAAGGGAGGTGGGGATTATTGTGTTACAG AGTGGAATGATACGGCGGCGGAATATTTGTTCGGGAGTTCGTACGATCCGTATGCCGACAGCGGCGGTGGTTGGGATTATCGGCGGCGTGATTGGGCGAC GAGTGAGAGTTATCAGTGTACGTATGGTGAAGACTTGAGCTGA
AA sequence Show only first row Show all	>Lus10018397 pacid=23162131 polypeptide=Lus10018397 locus=Lus10018397.g ID=Lus10018397.BGIv1.0 annot-version=v1.0 MQLIYGDAIAYNYYGGGAPYSYNYYAASDYSYSHHHCYDSASYLYGSGATNYNYYAYEQLPSLTHYAESNPTQSIALLEFNETDFEEYDSTPYGGGYDLA QTYGNPLPQSDQTCYPRSTAVNIIPSAVIAATTILSAPQVEIRKPNEPKIEESKPKEMEMIEELEAVKEEADVKEDGYEYGYGGSGYAGRVPSGYGLEAV DLCESLFGYWPCLEKSRRESEGYVKGGGDYCVTEWNDTAAEYLFGSSYDPYADSGGGWDYRRRDWATSESYQCTYGEDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11440			unknown protein		Lus10018397 [exp]	0	1
AT1G11440			unknown protein		Lus10007616 [exp]	2.0	0.8045
AT5G11960			Protein of unknown function (D...		Lus10013530 [exp]	4.2	0.7872
AT3G24160		PMP	putative type 1 membrane prote...		Lus10000760 [exp]	6.5	0.7930
AT3G06145			unknown protein		Lus10004420 [exp]	9.8	0.7735
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	10.2	0.7758
AT3G06145			unknown protein		Lus10034029 [exp]	12.3	0.7767
AT2G05320			beta-1,2-N-acetylglucosaminylt...		Lus10001748 [exp]	13.9	0.7596
AT4G20040			Pectin lyase-like superfamily ...		Lus10038369 [exp]	17.7	0.7455
AT3G15810			Protein of unknown function (D...		Lus10007118 [exp]	19.8	0.7431
AT5G61660			glycine-rich protein (.1)		Lus10032507 [exp]	20.7	0.7619

Compare expression of checked genes

Lus10018397 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.