Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11430 286 / 2e-99 plastid developmental protein DAG, putative (.1) AT3G06790 154 / 3e-47 plastid developmental protein DAG, putative (.1.2) AT2G33430 151 / 4e-46 DAL1, DAL differentiation and greening-like 1 (.1) AT1G32580 147 / 9e-45 plastid developmental protein DAG, putative (.1) AT2G35240 140 / 1e-41 plastid developmental protein DAG, putative (.1) AT4G20020 137 / 4e-39 unknown protein AT5G44780 139 / 3e-38 unknown protein AT3G15000 125 / 1e-34 cobalt ion binding (.1) AT1G72530 108 / 8e-30 plastid developmental protein DAG, putative (.1.2) AT3G20930 71 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007615 [exp] 335 / 1e-118 AT1G11430 314 / 2e-109 plastid developmental protein DAG, putative (.1) Lus10016825 [exp] 154 / 1e-46 AT3G06790 286 / 1e-97 plastid developmental protein DAG, putative (.1.2) Lus10023744 [exp] 146 / 4e-44 AT1G32580 342 / 2e-120 plastid developmental protein DAG, putative (.1) Lus10011789 [exp] 146 / 5e-44 AT1G32580 341 / 5e-120 plastid developmental protein DAG, putative (.1) Lus10035806 [exp] 150 / 7e-44 AT4G20020 278 / 4e-90 unknown protein Lus10037713 [exp] 148 / 3e-43 AT4G20020 261 / 9e-84 unknown protein Lus10036589 [exp] 147 / 6e-43 AT4G20020 271 / 1e-87 unknown protein Lus10014696 [exp] 132 / 6e-37 AT3G15000 291 / 1e-95 cobalt ion binding (.1) Lus10043130 [exp] 129 / 2e-35 AT3G15000 284 / 6e-92 cobalt ion binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G032900 [exp] 273 / 3e-94 AT1G11430 261 / 1e-88 plastid developmental protein DAG, putative (.1) Potri.010G007200 [exp] 168 / 3e-52 AT3G06790 269 / 6e-91 plastid developmental protein DAG, putative (.1.2) Potri.003G015100 [exp] 155 / 3e-45 AT4G20020 239 / 2e-74 unknown protein Potri.010G068300 [exp] 143 / 9e-43 AT1G32580 314 / 2e-109 plastid developmental protein DAG, putative (.1) Potri.008G169900 [exp] 142 / 2e-42 AT1G32580 284 / 2e-97 plastid developmental protein DAG, putative (.1) Potri.011G112200 [exp] 132 / 3e-37 AT3G15000 245 / 2e-77 cobalt ion binding (.1) Potri.001G393400 [exp] 129 / 6e-36 AT3G15000 263 / 2e-84 cobalt ion binding (.1) Potri.004G218650 [exp] 108 / 1e-27 AT4G20020 187 / 5e-53 unknown protein Potri.004G218800 [exp] 96 / 3e-23 AT4G20020 182 / 8e-51 unknown protein Potri.010G237200 [exp] 87 / 2e-20 AT3G20930 429 / 5e-150 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018398 pacid=23162223 polypeptide=Lus10018398 locus=Lus10018398.g ID=Lus10018398.BGIv1.0 annot-version=v1.0 ATGGTTACCCGCGCGGCGGTGGATTCTGACTACTCGTCGTCGAAGAGGAGCAGCAGCAGCGAGCAGAGGGAGACGATAATGTTGCCAGGTTGTGACTACA ACCACTGGCTGATTGTGATGGATTTCCCCAAGGATCCCGCGCCGACCAGAGAGCAGATGATCGATACCTATCTCCAGACTCTCGCTTCCGTCTTGGGAAG TATGGAAGAGGCGAAGAAGAACATGTATGCGTTCAGCACGACGACGTATACTGGGTTTCAGTGTACAGTGGATGAAGCCACCTCTGAGAAATTCAAAGGG TTGCCTGGAGTGCTGTGGGTGCTGCCTGACTCCTACATTGATGTCAAGAACAAAGACTATGGAGGTGATAAGTATGTGAATGGTGAGATCATCCCATGCT CATACCCGACATACCAACCGAAGCAGCGGAGGACTTCGAAGTACGAGAGCAAGAGGTACGAGCGAAGAAGAGACGGTCCACCATCTGCAAAGAGACCAGC ACCAACGCAGCCTGCTGCAACAAGATCATCATCTTCGGAGTCTTCCTCGTGA
AA sequence Show only first row Show all	>Lus10018398 pacid=23162223 polypeptide=Lus10018398 locus=Lus10018398.g ID=Lus10018398.BGIv1.0 annot-version=v1.0 MVTRAAVDSDYSSSKRSSSSEQRETIMLPGCDYNHWLIVMDFPKDPAPTREQMIDTYLQTLASVLGSMEEAKKNMYAFSTTTYTGFQCTVDEATSEKFKG LPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCSYPTYQPKQRRTSKYESKRYERRRDGPPSAKRPAPTQPAATRSSSSESSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11430			plastid developmental protein ...		Lus10018398 [exp]	0	1
AT3G21200		PGR7	proton gradient regulation 7 (...		Lus10035751 [exp]	7.0	0.8783
AT4G01310			Ribosomal L5P family protein (...		Lus10007915 [exp]	9.7	0.8946
AT5G58250		EMB3143	EMBRYO DEFECTIVE 3143, unknown...		Lus10031946 [exp]	12.0	0.8897
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	13.1	0.8924
AT2G34640		HMR, PTAC12	HEMERA, plastid transcriptiona...		Lus10038523 [exp]	14.3	0.8793
AT3G23760			unknown protein		Lus10043212 [exp]	16.7	0.8773
AT1G69740		HEMB1	Aldolase superfamily protein (...		Lus10029675 [exp]	18.2	0.7989
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10024430 [exp]	19.2	0.8805
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Lus10006116 [exp]	19.3	0.8820
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Lus10013424 [exp]	21.4	0.8740

Compare expression of checked genes

Lus10018398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.