Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18600 238 / 6e-77 ATRBL12 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1) AT1G74130 157 / 9e-46 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G74140 128 / 2e-34 Rhomboid-related intramembrane serine protease family protein (.1.2.3.4.5) AT3G53780 44 / 0.0001 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT1G63120 42 / 0.0003 ATRBL2 RHOMBOID-like 2 (.1) AT1G12750 42 / 0.0004 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT5G07250 41 / 0.0006 ATRBL3 RHOMBOID-like protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017840 [exp] 42 / 0.0003 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10024497 [exp] 42 / 0.0004 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10007614 [exp] 0 / 1 AT1G18600 216 / 5e-69 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227300 [exp] 258 / 1e-84 AT1G18600 324 / 3e-110 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1) Potri.003G019500 [exp] 44 / 0.0001 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.001G108700 [exp] 42 / 0.0004 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.015G142000 [exp] 41 / 0.0006 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10018399 pacid=23162122 polypeptide=Lus10018399 locus=Lus10018399.g ID=Lus10018399.BGIv1.0 annot-version=v1.0 ATGCAGAGGCTTTTCTCAAAGCGATTCCTAAATGGTTGCAGTTCTTCATTTCTCTACCATTCTCAACTTCACAGCAAGAAGCCCTTCACTTCTCTCAACA CCCCAGGTGGCGGAAACACCCTTCATCAGTTTCTTTCCTCTTCCGGCGGCAAACACCGAATCCAATGTTTCCCCACCTGTACGGGGAAGATATTCCATCG ACCCAATTTCGGAAGTCTCGTTGGGCGTAGTAGAGATGGGGTCATGGAGATTCAATTTTCCAGAGGATACCGTGGTGGATTCGATAGAGGTTTCCGCTCA TATGGTTCTCATTGGAGATCATGGCTTAATCGGCTGACACCCAACGACGTCGTATGGGGATTGGTTATTGCTAATGCTGCTGTTTTCTTCCTGTGGCGGA TTGAAAGTCCAAGGTTTATGGTGCAGAACTTTATGATTTCTGTGGACAACTTCAGAAGTGGGCGCATTCATACGTTGATTACTTCTGCATTCAGCCATAA AGATCTTGGACACCTTTTATCTAACATGTTTGGACTTTACTTCTTTGGAATCAATGTAGCTCAATCTTTTGGACCTCAATATTTGTTAAAGTTGTATCTA GCGGGAGCAATTGGCGGCTCGGTGTTCTACTTGTTGCACCACTACTTCATGGCTCTATCATCACAGGGAGCCAGTGGGGCTGTGAATGCCATCGTGCTGC TTGAAATATTCCTGAATCCAAAAGCCACCATCATGCTTGACTTTATTATTCCTGTCCCTGCCATGTTATTGTGGCTTACAAGTTTTGATTTGTCGGTTTT CAAGGGTGTCCTTTTTATCGGCAAGGACGTGTGGAGAATAGTGCAGGGAGATAGCAATATCTCGGGATCGGCACACTTAGGAGGAGCAGCGGTTGCAGGT TTAGCATGGTATCGAATTCGGAGGGGTCGTTTCTGA
AA sequence Show only first row Show all	>Lus10018399 pacid=23162122 polypeptide=Lus10018399 locus=Lus10018399.g ID=Lus10018399.BGIv1.0 annot-version=v1.0 MQRLFSKRFLNGCSSSFLYHSQLHSKKPFTSLNTPGGGNTLHQFLSSSGGKHRIQCFPTCTGKIFHRPNFGSLVGRSRDGVMEIQFSRGYRGGFDRGFRS YGSHWRSWLNRLTPNDVVWGLVIANAAVFFLWRIESPRFMVQNFMISVDNFRSGRIHTLITSAFSHKDLGHLLSNMFGLYFFGINVAQSFGPQYLLKLYL AGAIGGSVFYLLHHYFMALSSQGASGAVNAIVLLEIFLNPKATIMLDFIIPVPAMLLWLTSFDLSVFKGVLFIGKDVWRIVQGDSNISGSAHLGGAAVAG LAWYRIRRGRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10018399 [exp]	0	1
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	3.2	0.9496
AT5G42330			unknown protein		Lus10013229 [exp]	7.7	0.9382
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	8.2	0.9400
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	8.7	0.9320
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	11.4	0.9291
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10013226 [exp]	12.2	0.9272
AT1G50240		FU	FUSED, Protein kinase family p...		Lus10039168 [exp]	19.1	0.9204
AT1G16630			unknown protein		Lus10006845 [exp]	19.1	0.9268
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	19.4	0.9251
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	19.9	0.9228

Compare expression of checked genes

Lus10018399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.