Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61660 187 / 2e-56 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT3G20640 170 / 4e-49 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G21340 134 / 5e-37 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 129 / 4e-35 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 127 / 1e-33 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G05170 123 / 2e-33 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 126 / 1e-32 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 122 / 2e-31 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G31050 117 / 1e-29 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 109 / 4e-29 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007613 [exp] 520 / 0 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10038550 [exp] 199 / 2e-59 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 141 / 4e-38 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 118 / 1e-32 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 118 / 1e-32 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10023669 [exp] 123 / 6e-32 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10010638 [exp] 119 / 2e-30 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013874 [exp] 118 / 2e-30 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 101 / 2e-23 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G029100 [exp] 266 / 1e-85 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 259 / 2e-83 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 225 / 2e-70 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 221 / 9e-69 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G083700 [exp] 137 / 9e-38 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 130 / 4e-35 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 129 / 4e-35 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 127 / 8e-35 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 124 / 2e-33 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 127 / 3e-33 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018400 pacid=23162196 polypeptide=Lus10018400 locus=Lus10018400.g ID=Lus10018400.BGIv1.0 annot-version=v1.0 ATGGGCTTTGGCGTCGGTGTATCGTCTTCTTCGCCGTCGTCCGAGGATTGGAATCAGCGACAGCATATTGGGAGTGGTAACTACAACAGTACTTCAATGC TGGAAGATGAAATGAACAGCCGCGGTCGTCCACTCAACCATAATCTAAGTAGGTTGACCAATGATTTCTCATCGAATCCGATTCATGGCTACCCGATTCA AGGCTTGTTCGAATCCGATTCACAACAAAACCCGATATTCGTCAACAACTTCCCGTCCCCTTCTGCTACTTACGGGATCGGAAACAGCTTGTTGAATGGA TTGTCTCCTTCTTGGTCGAAATTCCAAAACCCTAATCATCAAAACGACAATCACCACCAAGATCACCTCCGGTTCTCGAATGGTGTGATGCCATTTTGGA ACAATCAAACAGCGACCCAGACCGATAGTATCCAAACCGGTTATGCACCGACACAAACCCGGTTCGTTGTCCCGGCTTTCAACGAGAAACCAACCAGTTG CCCCAGTAGAAGCTCCACTAAGTCTAAGAAGGAAGAAGCTACTAATAATACTACCAAGGAGTGGAAACCGAAAACCAAGAAGGAAACCGGTTCCGAGTCG TCTTTCAAACGACCTCGAATCGAGACTCCATCATCGTTGCCAACTTTTAAGGTTCGGAAAGAGAAATTGGGCGACCGAATAACCGCTCTACAACAATTAG TTTCGCCCTTCGGGAAGACGGATACAGCATCAGTGCTCCATGAAGCCATTGAGTACATCAAATTCCTCCATGACCAAGTCGGTGTTTTAAGCACTCCATA CATGAAGAATGGAAACCCTATTCAGCACCACTTACAGGGTTGTGACAAATTGGACCAAAACGAACAAGACCTAAGAAGCCAAGGGTTATGTTTGGTCCCA ATCTCAAGCACTTTCCCAGTTGCTCATGAGACCACAGCAGATTTCTGGACTCCAACTTTTGGTGGCTCCTTCAGGTAG
AA sequence Show only first row Show all	>Lus10018400 pacid=23162196 polypeptide=Lus10018400 locus=Lus10018400.g ID=Lus10018400.BGIv1.0 annot-version=v1.0 MGFGVGVSSSSPSSEDWNQRQHIGSGNYNSTSMLEDEMNSRGRPLNHNLSRLTNDFSSNPIHGYPIQGLFESDSQQNPIFVNNFPSPSATYGIGNSLLNG LSPSWSKFQNPNHQNDNHHQDHLRFSNGVMPFWNNQTATQTDSIQTGYAPTQTRFVVPAFNEKPTSCPSRSSTKSKKEEATNNTTKEWKPKTKKETGSES SFKRPRIETPSSLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVGVLSTPYMKNGNPIQHHLQGCDKLDQNEQDLRSQGLCLVP ISSTFPVAHETTADFWTPTFGGSFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10018400 [exp]	0	1
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	3.9	0.7983
AT3G22490			Seed maturation protein (.1)		Lus10042604 [exp]	13.0	0.7652
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10032750 [exp]	15.2	0.7448
AT5G01760			ENTH/VHS/GAT family protein (....		Lus10022753 [exp]	19.1	0.7393
AT5G02090			unknown protein		Lus10024357 [exp]	22.0	0.7472
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	26.6	0.7308
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	32.0	0.7297
AT3G20340			unknown protein		Lus10021518 [exp]	34.6	0.7222
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10030137 [exp]	35.4	0.7305
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	41.8	0.7195

Compare expression of checked genes

Lus10018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.