Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27270 341 / 4e-121 Quinone reductase family protein (.1) AT5G54500 339 / 4e-120 FQR1 flavodoxin-like quinone reductase 1 (.1.2) AT4G36750 281 / 3e-96 Quinone reductase family protein (.1) AT5G58800 268 / 3e-92 Quinone reductase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007612 [exp] 405 / 1e-145 AT4G27270 329 / 1e-115 Quinone reductase family protein (.1) Lus10006748 [exp] 367 / 3e-131 AT4G27270 323 / 5e-114 Quinone reductase family protein (.1) Lus10020076 [exp] 359 / 4e-128 AT4G27270 314 / 2e-110 Quinone reductase family protein (.1) Lus10041718 [exp] 276 / 3e-94 AT4G36750 357 / 3e-125 Quinone reductase family protein (.1) Lus10026035 [exp] 272 / 6e-93 AT4G36750 371 / 4e-131 Quinone reductase family protein (.1) Lus10014325 [exp] 270 / 3e-92 AT4G36750 370 / 2e-130 Quinone reductase family protein (.1) Lus10005862 [exp] 249 / 8e-85 AT5G58800 290 / 5e-101 Quinone reductase family protein (.1.2) Lus10040486 [exp] 235 / 1e-78 AT4G36750 291 / 6e-100 Quinone reductase family protein (.1) Lus10024032 [exp] 193 / 2e-63 AT4G36750 248 / 5e-84 Quinone reductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G033100 [exp] 352 / 3e-125 AT4G27270 352 / 1e-125 Quinone reductase family protein (.1) Potri.004G028900 [exp] 350 / 2e-124 AT4G27270 352 / 2e-125 Quinone reductase family protein (.1) Potri.001G410700 [exp] 340 / 8e-121 AT4G27270 345 / 1e-122 Quinone reductase family protein (.1) Potri.011G129400 [exp] 335 / 2e-118 AT4G27270 342 / 2e-121 Quinone reductase family protein (.1) Potri.005G126200 [exp] 271 / 1e-92 AT4G36750 361 / 4e-127 Quinone reductase family protein (.1) Potri.009G044400 [exp] 269 / 1e-92 AT5G58800 322 / 3e-113 Quinone reductase family protein (.1.2) Potri.007G029600 [exp] 270 / 6e-92 AT4G36750 362 / 3e-127 Quinone reductase family protein (.1) Potri.004G151100 [exp] 265 / 7e-90 AT4G36750 311 / 4e-107 Quinone reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0042 [flax] [poplar] Flavoprotein PF03358 [flax] [poplar] FMN_red NADPH-dependent FMN reductase
Representative CDS sequence Show only first row Show all	>Lus10018401 pacid=23162190 polypeptide=Lus10018401 locus=Lus10018401.g ID=Lus10018401.BGIv1.0 annot-version=v1.0 ATGGCCGTCAAAATCTACATTGTTTACTATTCTATGTATGGACATGTTGAGAAGCTAGCAGAAGAGATCAAGAAAGGAGCTTCGAGTGTTGAAGGTGTTG AAGTGAAGCTATGGCAGGTGGCAGAGACACTACCTGAAGAGGTGCTGGGAAAGATGGGTGCACCAGCAAAGAAGAATGATGTGCCAATCATCACTGCCAA TGATCTTCAAGAGGCTGATGGTATTCTTTTCGGATTTCCAACTCGGTTCGGGATGATGGCTGCTCAGTTCAAGGCGTTCATGGACTCCACTGGTGGGTTG TGGAGGACTCAGGCTCTTCAAGGGAAGCCTGCTGGTATTTTTTATGCTACTGGCTCTCAAGGTGGTGGACAGGAGACCACTCCATTGACAGCGATCACGC AGCTGGTGCACCACGGGATGGTGTTCGTCCCCGTGGGGTACACATTCGGAGCCGGGATGTTCGAGATGGAGCAGGTGAAAGGTGGGAGCCCCTATGGTGC AGGGACATTTGCAGGGGATGGAACCAGGCAGCCAACTGAGCTAGAGCTTGGACTTGCACACCACCAAGGACAGTACTTTGCGGGCATCGCCAAGAAAATG AAGGGTCCTTCTGCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10018401 pacid=23162190 polypeptide=Lus10018401 locus=Lus10018401.g ID=Lus10018401.BGIv1.0 annot-version=v1.0 MAVKIYIVYYSMYGHVEKLAEEIKKGASSVEGVEVKLWQVAETLPEEVLGKMGAPAKKNDVPIITANDLQEADGILFGFPTRFGMMAAQFKAFMDSTGGL WRTQALQGKPAGIFYATGSQGGGQETTPLTAITQLVHHGMVFVPVGYTFGAGMFEMEQVKGGSPYGAGTFAGDGTRQPTELELGLAHHQGQYFAGIAKKM KGPSADA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	0	1
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	1.4	0.9428
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031181 [exp]	3.9	0.9299
AT2G26800			Aldolase superfamily protein (...		Lus10026823 [exp]	4.5	0.9294
AT4G27270			Quinone reductase family prote...		Lus10007612 [exp]	4.6	0.9096
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042314 [exp]	5.7	0.9296
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Lus10041496 [exp]	11.2	0.9344
AT2G43630			unknown protein		Lus10013892 [exp]	11.9	0.8946
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10007529 [exp]	16.2	0.9233
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10027710 [exp]	16.3	0.9107
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10030897 [exp]	21.3	0.9269

Compare expression of checked genes

Lus10018401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.