Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 684 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 670 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 602 / 0 ARK3 receptor kinase 3 (.1) AT4G21390 574 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G65800 566 / 0 ARK2 receptor kinase 2 (.1) AT1G61610 563 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 563 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G65790 561 / 0 ARK1 receptor kinase 1 (.1) AT1G61380 551 / 0 SD1-29 S-domain-1 29 (.1) AT1G11280 545 / 0 S-locus lectin protein kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017247 [exp] 1022 / 0 AT1G11340 503 / 2e-166 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 874 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 852 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 827 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 806 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 805 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013245 [exp] 805 / 0 AT1G11300 955 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10030767 [exp] 799 / 0 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 795 / 0 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036100 [exp] 827 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036400 [exp] 827 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 820 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 805 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 798 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 774 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 703 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 701 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 700 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 652 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018402 pacid=23162205 polypeptide=Lus10018402 locus=Lus10018402.g ID=Lus10018402.BGIv1.0 annot-version=v1.0 ATGCCCATGGACCTTCTTCTTATTCTCCCGCCATTTCTTTTCTTCATCCTCTTCTGTTGCTCTCCCGCCGCCGCCGCTTCGAACGACACATTAACTCAAT CACAATCTCTCACCGACGGGGAACTTCTAATCTCCAACTCCGGCAAATACGCCCTCGGTTTCTTCTCCCCCGGCGGAAGCACGAACAGATACCTCGGCAT CTGGTTCCTCCCCGTCCCCGAACAGACCGTCGTCTGGGTAGCCAATCGCAACACCCCCATCTCCGCCGACACCGGAATCCTAACATTCGACTCCACCACC GGCGACCTCGTACTCCGCGATGGAAACGTTTCGATCTGGTCGACCCACACGAAACAATTCGATCCTTTTCGATCAGCCAATCTGCTCGATTCAGGGAATT TGGTGCTGTTATCATCGGACAACTCGACGATTCTATGGCAGAGCATCGATTATCCGACGAACACTCTCTTACCGGGAGCGAAATTGGGGGTGGACAAGAG AACTGGGCTGGACCGGTTCCTGACCTCGTGGCGATCCGAGTCCGACCCGGGAACCGGGTCATTCACGTTCCGGGTTGAGCCGAGCGGGTCGCCGCAGTTC ATCCTCTATAAGAACGGAACTCCTTATTCGAGGAGCAATCCATGGCCGTGGGGCAGCTACGGGGAGCTATTCGAGGTCGATTTTGTAAATAACGCAGACG AAGCTTCCTTCACCATCACGCTGAACGATGATTCGGTTCTGCTTTGGAATACGGTGGACTATACCGGAGTCAACCGGCAGAAAATTTGGCGGGAAGGCTA TGGCGGGTGGAAAGAGTACTGGTGTTCGCCGACTCAAAAATGCGATCTTTACGGAAGGTGCGGGAAGAATGGACTCTGTGATCCGAGCAATGTTAATAGT TTTGAGTGTTCTTGCTTGCCAGGGTATGTGATTAGGTCGCCCAGGAGCTGGCATTTATTCGATGGATCCGGTGGGTGTGTCAGGAAGAGGTCCGATTCGG ATTCGGATTGTGGGGAAGGAGACGGGTTTGTGAAGGTGCAGAAGGTGAAGGCTCCGGATACTTCGAAGGCGATTTGGATCGAGAAGAGCGGGTGGTGTGA AGTTGAGTGTAGAAAGAACTGTTCTTGCTCTGCTTATGCTGAGGTTGATGCTGGTAAGGAGAAAGGTTGCTTGCTCTGGTTTGGGGATCTGGTCGATACG GTTTATTACCCTGGTAATGCTCAGGATCTGTATGTTCGAGTCAATGCGGTCGAATTCGCTAATTATCGAGACGGATCGAACAAGTTTCTCGAGTTGAAGC TGAAGCTGAGCATTGCCCTGCCCTCCATTGCTGCATTATGGCTTGTTCTTATCTTGTTCGGCTTCTTCTGGCTGAGGAGGTGGCGAAGCAGGACAGTGAA GAAGAGAAGGATCCGAGATTTGTTTCACCCGAACCATAGTTCAAACCGGTTCAAAGATGATGGGATGTCGAGTGAGGAGATGGGCGGGAACTCGGTGTAC CCAGAGCTGCCATTCTTCAGCCTGAGCACTATCCGGGCTGCTACTGACGATTTTTGTCCTGCTAACCAGCTGGGACGGGGAGGGTTCGGGTCGGTTTACA AGGGGAGGCTACCAAATGGACAAAAGGTTGCTGTGAAGCGGCTGAGCGAAAATTCGAGGCAAGGGCTCGAGCAGTTCAGGAACGAAGTACTCTTGATAGC GAAGCTGCAACATCGGAATCTCGTTAAGCTCCATGGATGCTGCGTTGAAGAAGAAGAACAAATGCTGATCTATGAGTACTTGCCTAACAGAAGCTTTGAC CTTTTTCTATTCCATCAATCAGGGGGAATTGTGTTGGACTGGACGAGACGGTTCAATATCATTGTCGGTATTGCGCGTGGGATCTTGTACCTTCATCAGG ATTCGAGGTTCAGGATAATCCACAGAGACTTGAAAACCAGCAACATTCTTCTCGATGCTGAGCTGAACCCGAAAATCTCCGATTTCGGGCTGGCTACGAT GCTCGAGGTCTGCCAAGTTCATGGGAAGGCATCTACCATTGGAGGAACATACGGTTACATGTCACCAGAATATGCAGTGTTTGGAAGATTTTCCGAAAAG TCTGACGTGTTCAGTTTCGGTGTGATTCTATTGGAGACGGTTACAGGCAAGAAGATCAGTACACTCTATCGAGGAGACGAGAGCCTGAGCTTGATAGGCC ATGTGTGGGAGCTGTGGAATGAAGATAGAGTGCTGGAGGCAGTGGATTCGTCGATGGAGGGATCGTACGATAGCAGGGAAATGATGAGATGTATCCATAT CGGGTTGCTCTGCCTCGAGGAAAACGTCGAAGATCGACCCAATATGCTTACGACGGTTCTGATGTTGAACAGTGCAATGCCGGTTCCTGAACTTAAACAA CCTGCATTTACCATCAGAAGCTGCAATGATCATCGGTCACTCGAAGGAACCGGCGGTGTACCGTGCTCTTTCAACGACGTGACTCTAACCGATATCTCGT CGCGTTGA
AA sequence Show only first row Show all	>Lus10018402 pacid=23162205 polypeptide=Lus10018402 locus=Lus10018402.g ID=Lus10018402.BGIv1.0 annot-version=v1.0 MPMDLLLILPPFLFFILFCCSPAAAASNDTLTQSQSLTDGELLISNSGKYALGFFSPGGSTNRYLGIWFLPVPEQTVVWVANRNTPISADTGILTFDSTT GDLVLRDGNVSIWSTHTKQFDPFRSANLLDSGNLVLLSSDNSTILWQSIDYPTNTLLPGAKLGVDKRTGLDRFLTSWRSESDPGTGSFTFRVEPSGSPQF ILYKNGTPYSRSNPWPWGSYGELFEVDFVNNADEASFTITLNDDSVLLWNTVDYTGVNRQKIWREGYGGWKEYWCSPTQKCDLYGRCGKNGLCDPSNVNS FECSCLPGYVIRSPRSWHLFDGSGGCVRKRSDSDSDCGEGDGFVKVQKVKAPDTSKAIWIEKSGWCEVECRKNCSCSAYAEVDAGKEKGCLLWFGDLVDT VYYPGNAQDLYVRVNAVEFANYRDGSNKFLELKLKLSIALPSIAALWLVLILFGFFWLRRWRSRTVKKRRIRDLFHPNHSSNRFKDDGMSSEEMGGNSVY PELPFFSLSTIRAATDDFCPANQLGRGGFGSVYKGRLPNGQKVAVKRLSENSRQGLEQFRNEVLLIAKLQHRNLVKLHGCCVEEEEQMLIYEYLPNRSFD LFLFHQSGGIVLDWTRRFNIIVGIARGILYLHQDSRFRIIHRDLKTSNILLDAELNPKISDFGLATMLEVCQVHGKASTIGGTYGYMSPEYAVFGRFSEK SDVFSFGVILLETVTGKKISTLYRGDESLSLIGHVWELWNEDRVLEAVDSSMEGSYDSREMMRCIHIGLLCLEENVEDRPNMLTTVLMLNSAMPVPELKQ PAFTIRSCNDHRSLEGTGGVPCSFNDVTLTDISSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10018402 [exp]	0	1
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Lus10002576 [exp]	4.4	0.7869
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	5.3	0.7822
AT2G02370			SNARE associated Golgi protein...		Lus10012163 [exp]	22.1	0.6848
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10030366 [exp]	40.2	0.7025
AT4G22360			SWIB complex BAF60b domain-con...		Lus10016581 [exp]	47.7	0.7345
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	72.5	0.7063
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10011548 [exp]	78.4	0.6828
AT3G12000			S-locus related protein SLR1, ...		Lus10003420 [exp]	78.5	0.6744
					Lus10000890 [exp]	126.1	0.6879
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	126.4	0.7071

Compare expression of checked genes

Lus10018402 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.