Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49725 232 / 6e-71 GTP-binding protein, HflX (.1) AT5G57960 52 / 3e-07 GTP-binding protein, HflX (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024287 [exp] 50 / 1e-06 AT5G57960 634 / 0.0 GTP-binding protein, HflX (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G007700 [exp] 274 / 2e-87 AT3G49725 513 / 3e-176 GTP-binding protein, HflX (.1) Potri.002G031100 [exp] 49 / 2e-06 AT5G57960 738 / 0.0 GTP-binding protein, HflX (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018403 pacid=23162111 polypeptide=Lus10018403 locus=Lus10018403.g ID=Lus10018403.BGIv1.0 annot-version=v1.0 ATGAATTTACCAACTTTATGTGATTTGCAGCGTGCTTGGGAGAAGCCTGTGCTAGACCGTGTGGGACTTATCATAGAGATTTTCAATGCTCATGCTCACA CAGGGGAGGCAAAGCTACAGGCTGAATTAGCAGCTCTTATGTATATGAAAAGCAGGCTAGTTCGTGTGCGAAGTGCAGATGGTCGCTTTGCCTTCGGAGC GAGTGGGGAGGCTGAGGTTGTTAGTGCTCGCGGGAGAGGAAGCGGAGGACAAGGATTTATGAGTGGAGCAGGAGAAACTGAACTCCATCTTCAACGACGA AGAATACTGGAGAGGCGAAGCCGTTTGCTGTCACAAATTGGAGAGGTTCGTCGGACTCGAGCTTTGCATCGGGCTGGTCGTAAAAGGCGGGGTGCAGTCG ACAATCAACCCTTGACCACTGTTGCTGTTGTCGGCTACACAAACGCTTTAGTTCAAGCTTTTCATGCCACCTTAGAGGAAGTTGTTGAAGCAGACCTCCT TCTGCATGTAGTAGACAGCACGGCTCCTAACCTCGAGGAGCATCGTGCAACAGTGTTGAAAGTTCTTCAACAGATAGGAGTGTCTGAAGAAAAGATTCAG AATATGATTGAAGTCTGGAACAAGATTGATTACGAAGATGAAGAAGAAGATGACAACACCGGACTTTCCTCTGTTGAAGAAGATGTTAGTCTGTCGGGTT CAGAAACCATGAAAATAGAGGAGGAAGGTGACCACTCTGATGGATGGTTGTTGTCTGAAGATGACGACCAGGACACCGAGGACGACAAATGGCTCGAGTC TTTGAACGGGGAAGAAACGGTGACGACGCAAAAGAGTCTTGCATCGCAAGTTAAGCAAGAACCCGATCTGAAGATATCGGCCCTAACAGGAGTAGGATTG CAGGAATTGTTGGAGCTGATTGATGAGAAGTTGAAGAAAACTGAGGCCGAGAAGTTCAAAGCAGTGAAGGGTGACGTTGAAACGGGTTTTTATGACCGGA AATGGCGGCCTCCCCGAGATAATGAGGCTGACGTGGCAGCATAA
AA sequence Show only first row Show all	>Lus10018403 pacid=23162111 polypeptide=Lus10018403 locus=Lus10018403.g ID=Lus10018403.BGIv1.0 annot-version=v1.0 MNLPTLCDLQRAWEKPVLDRVGLIIEIFNAHAHTGEAKLQAELAALMYMKSRLVRVRSADGRFAFGASGEAEVVSARGRGSGGQGFMSGAGETELHLQRR RILERRSRLLSQIGEVRRTRALHRAGRKRRGAVDNQPLTTVAVVGYTNALVQAFHATLEEVVEADLLLHVVDSTAPNLEEHRATVLKVLQQIGVSEEKIQ NMIEVWNKIDYEDEEEDDNTGLSSVEEDVSLSGSETMKIEEEGDHSDGWLLSEDDDQDTEDDKWLESLNGEETVTTQKSLASQVKQEPDLKISALTGVGL QELLELIDEKLKKTEAEKFKAVKGDVETGFYDRKWRPPRDNEADVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49725			GTP-binding protein, HflX (.1)		Lus10018403 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	3.5	0.9076
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	8.7	0.8981
AT3G49640			Aldolase-type TIM barrel famil...		Lus10003486 [exp]	9.4	0.9089
AT4G12760			unknown protein		Lus10001181 [exp]	12.0	0.8981
AT5G07950			unknown protein		Lus10034694 [exp]	13.0	0.8802
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	15.3	0.8857
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	15.8	0.8970
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	18.4	0.8896
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	19.9	0.8954
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	20.4	0.8668

Compare expression of checked genes

Lus10018403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.