Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 951 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 912 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 889 / 0 ARK2 receptor kinase 2 (.1) AT1G11340 726 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 679 / 0 S-locus lectin protein kinase family protein (.1) AT4G27290 643 / 0 S-locus lectin protein kinase family protein (.1) AT1G61610 639 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 634 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 632 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G27300 597 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007603 [exp] 1392 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10007602 [exp] 809 / 0 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10038552 [exp] 744 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 724 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 724 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 720 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 716 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 712 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 711 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G028000 [exp] 1156 / 0 AT4G21380 1020 / 0.0 receptor kinase 3 (.1) Potri.011G037100 [exp] 1105 / 0 AT4G21380 982 / 0.0 receptor kinase 3 (.1) Potri.001G414077 [exp] 806 / 0 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 785 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 779 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 778 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 768 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G409300 [exp] 765 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 763 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412400 [exp] 757 / 0 AT4G27290 871 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12398 [flax] [poplar] DUF3660 Receptor serine/threonine kinase PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [flax] [poplar] PF11883 [flax] [poplar] DUF3403 Domain of unknown function (DUF3403) CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018405 pacid=23162137 polypeptide=Lus10018405 locus=Lus10018405.g ID=Lus10018405.BGIv1.0 annot-version=v1.0 ATGAAACCCATCCAAAGACCAACAAAAACCCATCTCTTCTTCATTATAATTTCCCTCTTCCCCTTACTCTGCTCCGCCGCCGACGTCCTCACCGCCGCCC AATCCTTAATCAACAACCAGACCCTCCTCTCCGCCGGCAGCGTCTTCGAGCTGGGATTCTTCACTCCGGAAGAATCCAACAACTGGTACTTAGGCATCTG GTACAAAAACATCCCTCAACGAACCTACGTCTGGGTCGCCAATCGCGATTCTCCTCTCCGGAACCTCTCCTCCGCCGAATTCAAATTCGATACCAGCTCG ATCGTCGTCGTTAGTGAAGGCAGAACTCTGTGGTCCTCGAACGGGACCGGAACGGTCCTGGATCCTGTTATTCAGCTGCTCGATACGGGCAATCTCGTTC TCCGGAACAGGACGAATCAGATTCTATGGCAGAGCTTCGATCATCCGGTGGACACTCTGCTCCCGGATATGAAATTAGGGTGGAATCTCGAGACCGGATT CGAAACTTACTTAAATTCATGGGCGGAGAAAGACGATCCAGGTACTGGGAAGCTGTCATTCAAGATGAATTACTCTGGTTTTCCGGAGTTCTTCCTCATC GACGGCGGCAGAGTAGATTACCGGAGCGGGCCGTGGAACGGCCGGCGATTCAGCGGGGTCCCCGAAATGCAGCCGTTGGATTACATCTCGTTCGACTTCG TGACGTCGGACAAAGAAGTGTACTACTCGTTCCACGTATCCTCGTCGGAGATCTACTCCCGGCTGAGGGTGACGCCAGACGGGACTCTCCGGCGGTACAC TTGGATCCCAGACATTGGTCAGTGGAAGCCGTTCTGGTACGCTCCCAAGGATCAATGCGACAGCTATAAGGAGTGTGGCAACTTCGGGATCTGCGATTCG AATGCTTCCCCTGTTTGTAAGTGTATGCGTGGGTTCCGGCCGAGGAACCCGGAGGCGTGGGAATTACGGGACGGGTCGGGCGGGTGTGCCCGGAAGACGG ATTCGGATTGTCCGAGGGATAGATTTTTGAAATTGGGGAATGTTAAGCTGCCGGAGAGTACGACGGCGGTGGTGGATCGGACTGTTGGGTTGAAGGAGTG CGGGGATAGGTGCGGGAGGGATTGTGAGTGTACGGCGTACGCGGCGGCGAATATTACTGACGGTGGCGCGTCGGGTTGCGTGATGTGGACGGGGGTGTTG GTGGATATGCGGCAGTACGCGGAGGGCGGGCAGGATCTTTACGTCCGATTGGCCGCATCCGATGTAGGCAACGACGGAGGCACGGCCACCTTCATCATCG GAATGTCAGCCGGCATCGGATCTCTCCTCATACTCCTCACAATCTGCCTAATCTGGAAAAGAAAAAACCTGACAGCTTTCTGTCAGAATCCCAAACACCA GAAATCACATCTAGAAAGAAGCCAGGACTCGTTCCTAAACGAAGCAGCGATTATCTCAAGCAAGAGGGACAACCACTACTCGGGCGAAAACAACGCCGCG GAGGAAGTGGTGGAGCTTCCATTGTTCGATTTCGGAACAATGGCAGCTGCCACCGACAACTTCTCCGAGGACAACAAGCTGGGGCATGGAGGGTTTGGAG TTGTTTACAAAGGTAGGATGGTGGATCATTATGAAGGGCATGGTGATGTGGCGGTGAAGAGGCTTTCGAGGAGTTCGGGGCAAGGATCGGAGGAGTTCAA GAACGAGGTTCAGCTGATTGCTAAGCTTCAGCATAGGAATCTTGTGAGGCTCGTTGGTTGCTGCGTTGAGATGGATGAGAAAATGCTGGTTTATGAGTAC ATGGAGAATCGAAGCTTGGACTCCATCATTTTCAATAGATCAAAGAGCAACTTGCTAACATGGGAAAGAAGGTTCAACATTATATGTGGCATCGCTAGAG GCCTTCTATATTTACACCAAGATTCGAGATTCAGAATAATTCATCGAGACTTAAAAGTGAGCAACATTTTGTTAGACACCGAATGGACTCCCAAAATATC CGATTTCGGTATGGCAAGGATATTCGGTACTGATCAAACTGAAGCTTGCACTAGAAGAGTAGTCGGAACATATGGCTACATGTCTCCAGAGTACGCAATG GATGGCCACTTTTCAGTCAAGTCAGATGTCTTTAGTTTCGGAGTTTTGGTGATAGAAATTGTTACGGGAAAGAAAAACCGCGGATTCTACCTCCCGAACA GCGACCTTAACCTCCTTGGACACTGTTGGAAGTTGTGGAAGGAAGGGCAAGGCTTGGAACTGGTGGATGAAGCAGTAGGGAGTTCATACTCAGCTTGTGA AGCTCTTAGGTGCATTCATGTTGGGCTTTTGTGCGTACAAGAGAGGGCTGAGGATAGGCCCACGATGGGATCAGTGTTGTTGATGCTCAGCAGTGAAACG GCGTCGTTGCCTACGCCGAAAACCCCCGGGTTTTGCCTTGGGAGGAGCCCTTTGGAGACTGATTCTTCTTCTGGGAAGCAAGATGAGACTTTTACTGTTA ATCAAGTTACAGTTACTGCGCTCGACGCTCGGTAA
AA sequence Show only first row Show all	>Lus10018405 pacid=23162137 polypeptide=Lus10018405 locus=Lus10018405.g ID=Lus10018405.BGIv1.0 annot-version=v1.0 MKPIQRPTKTHLFFIIISLFPLLCSAADVLTAAQSLINNQTLLSAGSVFELGFFTPEESNNWYLGIWYKNIPQRTYVWVANRDSPLRNLSSAEFKFDTSS IVVVSEGRTLWSSNGTGTVLDPVIQLLDTGNLVLRNRTNQILWQSFDHPVDTLLPDMKLGWNLETGFETYLNSWAEKDDPGTGKLSFKMNYSGFPEFFLI DGGRVDYRSGPWNGRRFSGVPEMQPLDYISFDFVTSDKEVYYSFHVSSSEIYSRLRVTPDGTLRRYTWIPDIGQWKPFWYAPKDQCDSYKECGNFGICDS NASPVCKCMRGFRPRNPEAWELRDGSGGCARKTDSDCPRDRFLKLGNVKLPESTTAVVDRTVGLKECGDRCGRDCECTAYAAANITDGGASGCVMWTGVL VDMRQYAEGGQDLYVRLAASDVGNDGGTATFIIGMSAGIGSLLILLTICLIWKRKNLTAFCQNPKHQKSHLERSQDSFLNEAAIISSKRDNHYSGENNAA EEVVELPLFDFGTMAAATDNFSEDNKLGHGGFGVVYKGRMVDHYEGHGDVAVKRLSRSSGQGSEEFKNEVQLIAKLQHRNLVRLVGCCVEMDEKMLVYEY MENRSLDSIIFNRSKSNLLTWERRFNIICGIARGLLYLHQDSRFRIIHRDLKVSNILLDTEWTPKISDFGMARIFGTDQTEACTRRVVGTYGYMSPEYAM DGHFSVKSDVFSFGVLVIEIVTGKKNRGFYLPNSDLNLLGHCWKLWKEGQGLELVDEAVGSSYSACEALRCIHVGLLCVQERAEDRPTMGSVLLMLSSET ASLPTPKTPGFCLGRSPLETDSSSGKQDETFTVNQVTVTALDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10018405 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	14.3	0.8296
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015570 [exp]	14.3	0.8444
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10019377 [exp]	15.1	0.8448
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037985 [exp]	16.0	0.7856
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10024087 [exp]	16.1	0.8224
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10000275 [exp]	20.1	0.8151
					Lus10023370 [exp]	20.6	0.8331
AT3G57120			Protein kinase superfamily pro...		Lus10029720 [exp]	20.6	0.8267
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	25.1	0.8126
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042525 [exp]	29.7	0.8376

Compare expression of checked genes

Lus10018405 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.