Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11340 687 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 654 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 607 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 605 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 587 / 0 ARK2 receptor kinase 2 (.1) AT4G27290 583 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 555 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21390 545 / 0 B120 S-locus lectin protein kinase family protein (.1) AT4G27300 544 / 0 S-locus lectin protein kinase family protein (.1) AT1G61500 533 / 3e-178 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007601 [exp] 1169 / 0 AT1G11340 501 / 3e-166 S-locus lectin protein kinase family protein (.1) Lus10041680 [exp] 883 / 0 AT1G15520 1646 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024064 [exp] 800 / 0 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007604 [exp] 733 / 0 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018402 [exp] 722 / 0 AT1G11340 691 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 718 / 0 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 713 / 0 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10013244 [exp] 697 / 0 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10034637 [exp] 693 / 0 AT1G11340 660 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G036400 [exp] 803 / 0 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 781 / 0 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 780 / 0 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035700 [exp] 780 / 0 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 777 / 0 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 776 / 0 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028466 [exp] 717 / 0 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028701 [exp] 716 / 0 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028600 [exp] 710 / 0 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 622 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018406 pacid=23162217 polypeptide=Lus10018406 locus=Lus10018406.g ID=Lus10018406.BGIv1.0 annot-version=v1.0 ATGGATAGTTCTTCTTCAAGTTCAACCCTGTTTCTGCAATTTCTGCTTCTGTCATTGCCACTGTTCTACTGCAGTCATCAATGTTCTTGCTATAATTACA CTGATAGATTATCCCTGAACCAAACCCTTAAAGATGGGAGATTCCTCATTTCCAAAGGCGGTAACTTTACTCTAGGGTTCTTCAGCCCGGGCGGGAATAC TAATAATAGCAATGGTAGACGATATCTAGGTATATGGTACAGTAGGATCCCGCAGCAGACCGTGGTTTGGGTTGCGAATCGCGACAATCCAATCAACGAT TCGTCAGGGGAGGTCTCATTTGATCCAATTACTGGAAACCTAATTATTAGGGTTCGGTCTCGACTCGTTTGGTCAGCTGATGTTTCAGCTGCTGCATTGT CAGCTCAGCTTATGGACACAGGCAATCTGGTTCTGTTTAATCGGAGGAGGAGAATGGTTTGGAAAACATTCGATCATCCGACGGATACAATTCTACAAGG GATGAGATTGGGGTTCGATCGGAGGACGAATAGGTTATCGTGGTTAAGTTCGTGGAGATCGGGTGATGATCCGGGGACAGGAGATTACGAGCTGAAGCTT GACATTAGAGGGTCAGTACCGCAGCTGCTTCTGTTGAAGAAGGGGGCGACGGTTTACTGGAGGAGCGCTCCATGGCCGTGGAAGAAGTACCCTCATGTTT ACAATTACTCATTCGAGAACAATGTGGATGGAGTTCAGTTCTCTTATTTCACCTATGATCCTTCTGTTACCATCAGGATTGTGATTGATGAGTTGGGGGT TCTGAAGCCGATGGCGTGGCACGAGAATAAGGAGGAGGATGGGAATGGAGGAGAGTGGAAGGAGTTTTGGTCTGCGCCGAAGCTAAGGTGTGATCTATAT GGACACTGTGGCGAGTATGGTAGCTGTGATCCTTTGAAGGTGAACACGTTCGAGTGTTCTTGTTTGCCCGGGTACGAACCAAAGTACCCCAAGGAGTGGT CTTTGAGAGTTGGGAGTGGTGGGTGTGTAAGGAAAAGACTATTAGTGGAGAGTTCTTCTTCAACTTGTGGCGGAGATGGGTTTTCGAGGGTTGAGCATGT TAAGCTCCCTGATGCTTCTGCTGCCATTTGGGTGGATATGATGTTCGATGCCGAATGTGGGAACAAGTGCTTAAGAAACTGTTCGTGTTCTGCATATGCA GTTGTGGAAGTGGATGATGGGAAAGGGAGACTGTGTATGCACTGGCATGGTGTGTTGCTGGACACGACGAATCGTGGAATAACCGATGGGTATGATCTCT ATGTTCGTGTTGACGCAGTTGAATTAGATGGATTACCTAAGGGGAGGTCTATGTTGGCAGTCTTGGGAGCTTCAGTTACTTCAGCGTGGTTTCTCGTTGT CTCGCTTTACCTGTGGCTGAGAAAGAGGGAAAGACAAGTGAAGGATAAATCGACAAGCAGAAGATCTAGCACTACCAGGATTGACAACGAACGGACTTAC CATCAGGACCTTAGATTTTTCAGTCTCAGTTCTGTATCTGCAGCAACTAGTCACTTCTCTGCAGCTAACAAGCTTGGTCATGGTGGCTTTGGTATCGTTT ACAAGGGACAAATGCAGGATGGTCAGGAGGTTGCTGTAAAAGTACTGAGCAAGAATTCAGGGCAAGGAGTGGAGGAATTCGAGAATGAAGCCGAGCTAAT TGCGAAGCTTCAGCACCGAAATCTCGTGAAACTGTTGGGATGCTGCATTGAGCATCAACAGCAGATATTGCTTTACGAGTACTTGGCAAATGGAAGCTTG GATTCGGTTCTTTTTGATGAAACGAGGAAGGTGTTGTTGGACTGGAGCAAGCGGTTCGGAATCATACTCGGTATAGCTCGAGGGATCTTGTATCTACACC ATGATTCAAGGCTGAGAGTGATCCACAGGGACCTGAAATCCAGCAACATTCTCCTGGATGCAGACATGAACCCGAAAATCTCTGATTTCGGGACAGCTAG AGTATGCAAAGGCGATGTACTTAGAGATCGAACCCGCAGAATCGTAGGAACATATGGTTACATGTCACCGGAATACGCAGTGCTCGGACATTTCTCAACG AAATCCGATGTCTTTAGTTTCGGGGTCATATTACTTGAGATCATTAGTGGTATCAGGATCACTGCGATCCGCGAAGAGAATCAGTCCCCGAACTTGATCG GACATGTATGGGAGCTATGGAGATCAGACAGAGAAAGATCAATGGAGGTAGTTGATCCATTAATGGAGGAAGAAGATAAGAACAAGTGCTGGGATGAGAT CTTGAGATGTATACAGACAGCCCTGCTATGTGTCCAGGAAAAACCAGACAACAGACCAGACATGTTAGCAGTACTTCTGATGCTGAACGGTGAAAGAACA CTGCCTCCCCCGAATCAACCCGCTTTCATTTTCCGAGAACCCGAATTGAGTAAACTCGCCAAAGAAGATGAACAATGTTCAATCAATCAGGTCACTATCA CAATGTGTACCTCTCGCTAG
AA sequence Show only first row Show all	>Lus10018406 pacid=23162217 polypeptide=Lus10018406 locus=Lus10018406.g ID=Lus10018406.BGIv1.0 annot-version=v1.0 MDSSSSSSTLFLQFLLLSLPLFYCSHQCSCYNYTDRLSLNQTLKDGRFLISKGGNFTLGFFSPGGNTNNSNGRRYLGIWYSRIPQQTVVWVANRDNPIND SSGEVSFDPITGNLIIRVRSRLVWSADVSAAALSAQLMDTGNLVLFNRRRRMVWKTFDHPTDTILQGMRLGFDRRTNRLSWLSSWRSGDDPGTGDYELKL DIRGSVPQLLLLKKGATVYWRSAPWPWKKYPHVYNYSFENNVDGVQFSYFTYDPSVTIRIVIDELGVLKPMAWHENKEEDGNGGEWKEFWSAPKLRCDLY GHCGEYGSCDPLKVNTFECSCLPGYEPKYPKEWSLRVGSGGCVRKRLLVESSSSTCGGDGFSRVEHVKLPDASAAIWVDMMFDAECGNKCLRNCSCSAYA VVEVDDGKGRLCMHWHGVLLDTTNRGITDGYDLYVRVDAVELDGLPKGRSMLAVLGASVTSAWFLVVSLYLWLRKRERQVKDKSTSRRSSTTRIDNERTY HQDLRFFSLSSVSAATSHFSAANKLGHGGFGIVYKGQMQDGQEVAVKVLSKNSGQGVEEFENEAELIAKLQHRNLVKLLGCCIEHQQQILLYEYLANGSL DSVLFDETRKVLLDWSKRFGIILGIARGILYLHHDSRLRVIHRDLKSSNILLDADMNPKISDFGTARVCKGDVLRDRTRRIVGTYGYMSPEYAVLGHFST KSDVFSFGVILLEIISGIRITAIREENQSPNLIGHVWELWRSDRERSMEVVDPLMEEEDKNKCWDEILRCIQTALLCVQEKPDNRPDMLAVLLMLNGERT LPPPNQPAFIFREPELSKLAKEDEQCSINQVTITMCTSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11340			S-locus lectin protein kinase ...		Lus10018406 [exp]	0	1
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	1.4	0.9336
AT4G12790			P-loop containing nucleoside t...		Lus10041086 [exp]	1.7	0.9403
AT3G52230			unknown protein		Lus10028838 [exp]	2.8	0.9293
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	4.2	0.9210
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	4.5	0.9287
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10013779 [exp]	4.5	0.9106
AT4G31180			Class II aminoacyl-tRNA and bi...		Lus10028555 [exp]	7.0	0.9251
AT5G18920			Cox19-like CHCH family protein...		Lus10034006 [exp]	7.2	0.8911
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	7.3	0.9319
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	8.0	0.9145

Compare expression of checked genes

Lus10018406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.