Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61390 707 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61370 705 / 0 S-locus lectin protein kinase family protein (.1) AT1G61550 697 / 0 S-locus lectin protein kinase family protein (.1) AT1G61380 694 / 0 SD1-29 S-domain-1 29 (.1) AT1G61480 686 / 0 S-locus lectin protein kinase family protein (.1) AT1G61500 685 / 0 S-locus lectin protein kinase family protein (.1) AT1G11280 684 / 0 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61430 683 / 0 S-locus lectin protein kinase family protein (.1) AT1G61490 682 / 0 S-locus lectin protein kinase family protein (.1) AT1G61420 676 / 0 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 1533 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10018408 [exp] 590 / 0 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 572 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 566 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 560 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007603 [exp] 557 / 0 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10038556 [exp] 555 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10006746 [exp] 554 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 554 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G027400 [exp] 653 / 0 AT1G11330 872 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 649 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039200 [exp] 648 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 645 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 633 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 631 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G037600 [exp] 624 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037800 [exp] 623 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039400 [exp] 621 / 0 AT1G11330 822 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038401 [exp] 617 / 0 AT1G11330 826 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018407 pacid=23162133 polypeptide=Lus10018407 locus=Lus10018407.g ID=Lus10018407.BGIv1.0 annot-version=v1.0 ATGGGTCATCGAGCTGGATTTGCTCTGTTTTCATTGTATGCTCTGTTTCTTCTTCTTCTTCTTCTGATAACAAATTTCTCACTCTGTTCTTCGTTAACGA CGAATCTCACTTCCTCCTCCCTTCCGCTTCTCTTAAACCAAACCTTAACTTCCACCAACGAAGTTTTCGAGCTGGGATTCTTCGCTCCGGACAGTAACAG ATCGAGAAGCTTCTATCTAGCTATCCGATTCAAGCAGACTTCTCCGCAGACGATCGTCTGGGTGGCGAATCGGGAAGCTTCCGTAACGGAGGATTCCGCT AGACTGTTAGTTAACGGCGCTGACGGGAACTTGGAGCTGCAGGATGGGAGACGACGTCGTATTTGGGCTACGAACGTTAGTTCGTCGGATAATTCCACCG CGGCGATTCTTCAAAACGACGGCAACTTGGTTTTGCGAAGCGGAAGAAGTGGAGAGATCCTATGGCAGAGCGGCGGTGATAATTTTGGAGACACTTTGAT CGCCGGGAGATGGCTGATGTTCAATCAGAGCAATCCGACGGCGAGGCCGTTCAGGCTGAATTCGTGGAAGGCCGCCGGAGATCCTTCGCCGGGGAGTTTT ACGGTGGGGTTTTTGTTACAGTCTCCGCCGCAGGCGACGATCTCGAGAGATGGTGGCCCCTATTGGAGGTCTGGACCATGGGATAGAGCTAGGTTTACGA ACATTCCTGACATGGACACTGATTATCAAAGCTCTCTGACGCTTATAGAGGATCAAGGACTGGTTTATCTGTCGTTGATTCCTCCGAGGAACTGTACTTA CGTGACGTTTCGAATGTCGTCGACCGGATCGTTGCAGCTGAGGTGCTGGGACGGGATTCGAGGGTGGTATACTCGGTGGGAGACTCCGAAGAGTGAGTGT GAGGTTTATGGAGCTTGTGGGGAGAATGGTATATGTGGGAGGGATGATCCATTGAAGTGCGAATGTGTTAGAGGGTTCGTGCCGAATTCGGAGGAGGAAT GGAAGGTTGGGAATTGGAGTAGAGGGTGTGTTAGGAGGACTGAGTCAGTCTGTGGCAGGAATGTGAGTAATGGAAATGGTGGTGGTGATGGGTTTTTAAA GCTGAGTGGAGTGAATGTACCTGAAAAGTATGAGTTCATGAGGGTTTGGGATGACGATGAGTGTTCGAGGCAGTGCTCGAACAACTGTTCGTGCACTGCC TATTCGTATGTGGATGGGATCGGGTGCTTACTTTGGTGGGGGGATATCGTTGATTTGCAGAGGCTCGAGTTTGCTGGGAAGGATCTTTACGTTCGTGTTG CTCGAAGCGAATTGAGTGATGGTAAGAGGAGTTCAGCAAGGCTAGTGGTTCTGCTTCCTACTGTTCTTGGGACTCTTGCTGTAGCTGCATTGGTTTTGTG TTTGATAATTTGGAAGAAAAGAAGGGTCAGCACAAAGGGTAAAAAAACTGAGAACTACTCAGGTGGCAGTACACAGAGGCTGAACTATATGCAGAAGGGA AATCCAGATGAACAAGAGTCGTTCGAGCTGCCGATGTTCGATTTGGAGAGCATTGAGTTAGCAACAAACAATTTCGACATCAGTAACTTGCTTGGGAGAG GAGGGTTTGGTCCTGTTTACTTGGGAAAGCTACCGGACGGGAAGATTGTGGCGATCAAGAGGCTTTCGAGCAGCTCGGGACAAGGCGCGGACGAGTTCAA GAACGAGATCATGTTGATATCAAAGCTCCAGCACAGAAATCTAGTCAGGCTACTTGGCTGTTGTGTTGAAGGACTGGAGAAGATGTTGATCTACGAGTAC ATGCCCAACAAAAGCTTGGACACTTATCTCTTCGATTCGACAAAGAAGGCGGAGCTGGATTGGCCTACACGTTGGAACATCATACACGGAATCGCTCGAG GGCTTCTCTATCTCCACCGCGATTCGTTGTTAAGAATCATACACAGAGATTTGAAGGTTAGTAATATTCTGCTCGACGAGAAGATGAATCCAAAGATATC GGATTTCGGGTTGGCGAGGATCTTCGAGGGGACGCAGGATTTGGCCAGTACACACAAGGTGGTGGGAACATTGGGGTACATGTCTCCAGAGTACTTACTA GCAGGAATGTTTTCCGAGAAATCCGACGTGTTCAGCTTCGGGGTTCTTCTGCTGGAAATCGTGAGCGGTAGGAAGACTACGAGCTTCCATTACGAGGAGC AGCATTCAAGCCTTCTTTCCTATGCATGGCGATCGTGGACCGAAACAGAAGGAGTAGGAATGGTAGACGATGCAGTGGCCAAATCGTTCAACGCATCGGA AGTGAGCAGATGTGTGAACGTGGGTCTACTGTGTGTGCAAGATCATGCTACAGACAGGCCAACAATGGCTGACGTGGTCTCAATGCTTAGCAGCGAAACG AGCCTTCCTCGGCCGAATCAACCCACATTCACGTTCCAGAACAAGACTCCGAATGTTAACAACTTCTTTGGTGGTGGTGGTCAGTCTTCCAGTGCAGAGA AATGGTCCGTCAATGACATCACTGAATCTGTCGTTGAAGGCCGGTGA
AA sequence Show only first row Show all	>Lus10018407 pacid=23162133 polypeptide=Lus10018407 locus=Lus10018407.g ID=Lus10018407.BGIv1.0 annot-version=v1.0 MGHRAGFALFSLYALFLLLLLLITNFSLCSSLTTNLTSSSLPLLLNQTLTSTNEVFELGFFAPDSNRSRSFYLAIRFKQTSPQTIVWVANREASVTEDSA RLLVNGADGNLELQDGRRRRIWATNVSSSDNSTAAILQNDGNLVLRSGRSGEILWQSGGDNFGDTLIAGRWLMFNQSNPTARPFRLNSWKAAGDPSPGSF TVGFLLQSPPQATISRDGGPYWRSGPWDRARFTNIPDMDTDYQSSLTLIEDQGLVYLSLIPPRNCTYVTFRMSSTGSLQLRCWDGIRGWYTRWETPKSEC EVYGACGENGICGRDDPLKCECVRGFVPNSEEEWKVGNWSRGCVRRTESVCGRNVSNGNGGGDGFLKLSGVNVPEKYEFMRVWDDDECSRQCSNNCSCTA YSYVDGIGCLLWWGDIVDLQRLEFAGKDLYVRVARSELSDGKRSSARLVVLLPTVLGTLAVAALVLCLIIWKKRRVSTKGKKTENYSGGSTQRLNYMQKG NPDEQESFELPMFDLESIELATNNFDISNLLGRGGFGPVYLGKLPDGKIVAIKRLSSSSGQGADEFKNEIMLISKLQHRNLVRLLGCCVEGLEKMLIYEY MPNKSLDTYLFDSTKKAELDWPTRWNIIHGIARGLLYLHRDSLLRIIHRDLKVSNILLDEKMNPKISDFGLARIFEGTQDLASTHKVVGTLGYMSPEYLL AGMFSEKSDVFSFGVLLLEIVSGRKTTSFHYEEQHSSLLSYAWRSWTETEGVGMVDDAVAKSFNASEVSRCVNVGLLCVQDHATDRPTMADVVSMLSSET SLPRPNQPTFTFQNKTPNVNNFFGGGGQSSSAEKWSVNDITESVVEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61390			S-locus lectin protein kinase ...		Lus10018407 [exp]	0	1
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	1.7	0.8489
AT1G71840			transducin family protein / WD...		Lus10033710 [exp]	5.5	0.7882
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10030734 [exp]	11.4	0.7621
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	12.6	0.7763
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	12.7	0.7651
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021104 [exp]	17.7	0.7686
AT5G61310			Cytochrome c oxidase subunit V...		Lus10001454 [exp]	20.7	0.7585
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10009631 [exp]	21.4	0.7470
AT1G56423			unknown protein		Lus10029844 [exp]	22.9	0.7737
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10039925 [exp]	26.5	0.7636

Compare expression of checked genes

Lus10018407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.