Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21390 932 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G61610 862 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 698 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11330 694 / 0 S-locus lectin protein kinase family protein (.1.2) AT4G21380 673 / 0 ARK3 receptor kinase 3 (.1) AT1G11350 667 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11340 661 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 642 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 616 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 615 / 0 ARK1 receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007600 [exp] 1645 / 0 AT1G11300 930 / 0.0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) Lus10006742 [exp] 951 / 0 AT4G21390 800 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020080 [exp] 860 / 0 AT4G21390 730 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 646 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10020052 [exp] 641 / 0 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 639 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 637 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 630 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006746 [exp] 627 / 0 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G037300 [exp] 1076 / 0 AT4G21390 922 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027800 [exp] 1062 / 0 AT4G21390 941 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G037600 [exp] 1060 / 0 AT4G21390 899 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G027900 [exp] 1049 / 0 AT4G21390 915 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039200 [exp] 719 / 0 AT1G11330 864 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039100 [exp] 718 / 0 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039000 [exp] 710 / 0 AT1G11330 797 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.004G027300 [exp] 708 / 0 AT1G11330 810 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G039300 [exp] 704 / 0 AT1G11330 829 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G038800 [exp] 696 / 0 AT1G11330 838 / 0.0 S-locus lectin protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10018408 pacid=23162124 polypeptide=Lus10018408 locus=Lus10018408.g ID=Lus10018408.BGIv1.0 annot-version=v1.0 ATGACCGGCGATTGTACACCCCTCCATTTCCACCTCTTATACTCCCTCCTTTTCCTCACTCTATCCTGCTCAGCCGCCAACCAGCTCAGCCGCGGCGAAT CGTTAAGAGACGGCGAGACTCTGCTCTCCATCGGCGACCGGTTCGAATTGGGATTCTTCTCCCCGGGAATCTCGACCTCCCGTTACCTCGCGATTAGGTA CCACGACGCTGAGGAGAACGATTCGGTCATCTGGGTAGCTAACCGAGACAGACCGATTCCTGATCGAACCGGTTTGCTCACCTTCGCTCAAGACGGTAAT CTAATCGTTACCGCCGGTGACGATACTACGCCAATCTGGTCGACGAACTCAACGCCGATCGAAGGAAACGACACCGTAGCGCTCCTGTCGATGGCGGGGA ATTTAATCCTTTCACGGAACGAGACTCTCGGAGACGTCGATCGAGCCTTCTGGCAGAGTTTCCAGAACCCGACGGACACTTACTTGCCGAACATGAGAGT TCTGGTGGACGCGTCCATAGGGGAGAACCACGCCTTTAGGTCGTGGAAGTCGCCAAACGACCCGTCGTTTGGAAACTTCACTTTGGGGGTGGACCCACGC GGAGCGCCGCAGATCGTGATCTGGGATGAGCTCAGGCGGCGAAGATGGAGGAGCGGGCAGTGGAATGGTTTAATCTTCACCGGTGTTCCCAGCATGACGA CGCTGACGAATTTCCAGTACGGATTCAAGCTGACAAGAGAAGAGGACGGTAGGCTTTACTTCACTTACAACCCGTCGAATTCCACGGCGCTGTTGAGGTT CCGAATCCGATACGACGGGACGGAGGAGCAGCTCCGGTGGAACGAAGCTACAAAAAATTGGGATGTCTTGCAGCGGCAACCGGAGGATGAATGCGAGAGA TACAACACCTGCGGCGAATTCGGAGTCTGCAACGAATCGGCGAGTCCGAAATGTGGGTGTATGGACGGGTTCCGGCCTAGGGATTTAGGGGAGTGGAATC GGGGGAATTTCTCCGGCGGGTGCGTGAGGAACACTGCGCTGGAATGTCGCCGGAGCAACGACAGTGAGACGGAAACTGAAACCGGGGGTGATGGGTTTAA AGCGATGAGGTGTGCCAAGTTGCCTGATTTTGCAGACGTGTTGACCGGACTCTCGCCGGATTCTTGCCGGGAGAGGTGCTTGGAGGATTGCGATTGCAGT GCTTACTCGTCGATCAGTGGGATCGGTTGTATGATATGGAGAGGTGGATTGGTTGATGTTCAGCATTTCAGCGGCGCTGGGAACGTCATGAATCTCAAGC TCGCTGCCTCCGAACTCGATGATGGCAAGAAACTGCCCACACCAGTAATAGTAGGGATTGTTCTTGCATCAGTTGTCTGTTTAGCCATTGCTGCATGGCT AATCTGCAGAATCAAACGGAAACTCAAAGTTTTGCCAGCATCTGCTGCATCAGTATCAGGACCAGTACAACAGAACGACTTGTCACTGTTTGATCCGACC AAGAGCAGGGAGTACTCGACCGATCTTTCCGGTCCAACTGATCTTATAATCGAAAGTGGGCGGATGAGTCATGCTGATCTACCACTGATGAACATCAATA TCGTGGCTCTCGCCACGAACCACTTCTCCGCGGAGAACAAGCTTGGGCAGGGTGGATTCGGACCGGTTTACAAGGGAACACTTCCGGGAGGGGAGGAGAT CGCGGTGAAGAGGCTATCGAGGATTTCGGGACAAGGATTGGAGGAGTTCAAGAACGAGATCAGTCTGATTGCGAAACTGCAGCATCGGAATTTGGTGAGG TTGTTAGGGTACTGTGTTCAGGGTGAGGAGAAGATGTTGATCTATGAGTACATGTCGAACAAAAGCTTGGACTTCTTTCTCTTTGACTCGAAGAAGCAAG CGACTCTGGACTGGGGGAAGCGGTTCGCGATCATCGAAGGGATTGCGCGTGGCCTCCTTTACCTCCATAGAGATTCGAGGTTGAGAATTATTCATCGCGA TCTCAAGGCTAGCAACATTTTGCTTGACGAGGAGATGAACCCCAAGATATCAGATTTCGGAATGGCTAGGATATTCGGTGGCAACCAGAATGAAGCCAAC ACCAACCGAGTTGTTGGAACATATGGTTACATGTCGCCAGAGTATGCAATGGAAGGCCTGTTCTCGGTGAAGTCAGACGTGTACAGCTTTGGGGTGCTAG TACTCGAGATCGTGAGCGGTAGGAGGAACACGAGCTTCCGTTCGTCGGACCACGTCAACCTGATCTCGTACGCCTGGGATCTCTGGAGTGAGGGAAGGCC GATCGAGCTTGTCGACCCGTCAATTCGAGAGTCGTGCATCAACGAGGAGGAGCTGCTTAGGTGCATACAGCTAGGGATGATATGCGTGCAAGACAATCCA GTGCAGAGGCCAACGATGGCAGCAGTGCTACTGATGCTCGAAAGCGATAGCCCGAGCTTGCCAATCCCGAGGCAGCCTACGTTTACCTCATCAATGAGAG CTTCCGTAGATAGAGATCTCTACTCCGAAGGTCAGGATCTTGTGTCCAATGAGTTAACTGCTACAATGTACGAAACGACAATTGCTCGCATTCTCTACAT GATGCTGAAGACTCTGGCAATTTGCTGTCAAATAGCGGGCGACTCACATGTCAGGTTAGTCGGGTCATGGATTCATCGGGTTGCGGGCTCACAGGGTCAT AAGTTATTCGTTGGCAAAGCGAGTCACGGGTCGCGGGCTTGCATGGTTAGTATGCAGCCCATGTTGTTTGTATTGGGCCTTTGA
AA sequence Show only first row Show all	>Lus10018408 pacid=23162124 polypeptide=Lus10018408 locus=Lus10018408.g ID=Lus10018408.BGIv1.0 annot-version=v1.0 MTGDCTPLHFHLLYSLLFLTLSCSAANQLSRGESLRDGETLLSIGDRFELGFFSPGISTSRYLAIRYHDAEENDSVIWVANRDRPIPDRTGLLTFAQDGN LIVTAGDDTTPIWSTNSTPIEGNDTVALLSMAGNLILSRNETLGDVDRAFWQSFQNPTDTYLPNMRVLVDASIGENHAFRSWKSPNDPSFGNFTLGVDPR GAPQIVIWDELRRRRWRSGQWNGLIFTGVPSMTTLTNFQYGFKLTREEDGRLYFTYNPSNSTALLRFRIRYDGTEEQLRWNEATKNWDVLQRQPEDECER YNTCGEFGVCNESASPKCGCMDGFRPRDLGEWNRGNFSGGCVRNTALECRRSNDSETETETGGDGFKAMRCAKLPDFADVLTGLSPDSCRERCLEDCDCS AYSSISGIGCMIWRGGLVDVQHFSGAGNVMNLKLAASELDDGKKLPTPVIVGIVLASVVCLAIAAWLICRIKRKLKVLPASAASVSGPVQQNDLSLFDPT KSREYSTDLSGPTDLIIESGRMSHADLPLMNINIVALATNHFSAENKLGQGGFGPVYKGTLPGGEEIAVKRLSRISGQGLEEFKNEISLIAKLQHRNLVR LLGYCVQGEEKMLIYEYMSNKSLDFFLFDSKKQATLDWGKRFAIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEEMNPKISDFGMARIFGGNQNEAN TNRVVGTYGYMSPEYAMEGLFSVKSDVYSFGVLVLEIVSGRRNTSFRSSDHVNLISYAWDLWSEGRPIELVDPSIRESCINEEELLRCIQLGMICVQDNP VQRPTMAAVLLMLESDSPSLPIPRQPTFTSSMRASVDRDLYSEGQDLVSNELTATMYETTIARILYMMLKTLAICCQIAGDSHVRLVGSWIHRVAGSQGH KLFVGKASHGSRACMVSMQPMLFVLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10018408 [exp]	0	1
AT4G24160			alpha/beta-Hydrolases superfam...		Lus10024310 [exp]	2.8	0.8647
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	3.2	0.8302
AT4G28290			unknown protein		Lus10018592 [exp]	5.3	0.8306
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	6.5	0.8504
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10012196 [exp]	9.0	0.8337
AT1G29690		CAD1	constitutively activated cell ...		Lus10029279 [exp]	10.2	0.7723
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011879 [exp]	10.6	0.8006
AT3G48170		ALDH10A9	aldehyde dehydrogenase 10A9 (....		Lus10034115 [exp]	10.8	0.7978
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10023838 [exp]	11.2	0.8132
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	12.7	0.8297

Compare expression of checked genes

Lus10018408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.