Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61620 402 / 7e-142 phosphoinositide binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002584 [exp] 540 / 0 AT1G61620 459 / 2e-164 phosphoinositide binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040000 [exp] 455 / 6e-163 AT1G61620 462 / 2e-165 phosphoinositide binding (.1) Potri.004G026800 [exp] 447 / 7e-160 AT1G61620 461 / 4e-165 phosphoinositide binding (.1) Potri.003G148300 [exp] 42 / 0.0003 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 40 / 0.0008 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04641 [flax] [poplar] Rtf2 Rtf2 RING-finger
Representative CDS sequence Show only first row Show all	>Lus10018409 pacid=23162177 polypeptide=Lus10018409 locus=Lus10018409.g ID=Lus10018409.BGIv1.0 annot-version=v1.0 ATGCCGCAGAGACACTCGAAGAACAACAACGATCTAGCCTTCTTCACCTACGATGAGAAGCGGAAGCTGGGTTACGGCACGCAGAGGGAGAGGCTTGGAA AGGACTCGATCAAGCCCTTCGATTCCTGCAGCCTTTGCTTGAAGCCGTTCATCAGTCCCATGTCCTGCCCAAAGGGTCACGTCTTCTGTAAAGAATGCAT CCTCGAGTGCATCCTAGCACAGAAGAAGGACATCCAGCGGAAGCTAGCAGCGCATGAACTACAAACAAAGCAAGAAAAAGAGGAAGAAGAAGAGAAAGCA GCAGCACAAAGAGCCAGAGAACTCGAAGCATTCGACCAGCAGAACCACGGAGCAGTCCCACAGTACACCAACGACCGAAACCAAAGCCAAGACAACAACA ACTTCCACGGAGCCAACTCTGTGAAAGCAACCTCGTACGAAGAAGAAGCTCTCCGTACAATGAAAGCCTTCTGGCTGCCCTCCGCCACCCCAGGAGCAGC CCTTAAACTAACAGCCCCGTCCCTTCACACAACCTGCCCCGAAGGATCGGAGAAGCTGACAATGAAGAGTTTGTTCCCCGTTCATATGACGGAGGATACG AGCGAAGGGAAATCCGGACATCTGGACAAGAAGTATCTTTGTCCTAGCTGTAAGGTTACGTTGACGAACACGGTGACGCTTGTGGCTTTAAGCTCGTGCG GGCACGTGTTCTGCAAGAAGTGTGGCGATAAGTTCGTGGCGGTCGATAAGGTCTGCCTGGTGTGTAGTAAAGGGTGTAAGGGGAAGAATCTGGTGCAGCT TGAGAAAGGTGGGACTGGGTTTGCTGGGCATGATGATCATCTTGTGGCGAGTGATTTTAAGCATTTGGGGAGTGGCTCTGGTTTGGGACTTGTTAGGCCT TCTTCTAAGGTTTGA
AA sequence Show only first row Show all	>Lus10018409 pacid=23162177 polypeptide=Lus10018409 locus=Lus10018409.g ID=Lus10018409.BGIv1.0 annot-version=v1.0 MPQRHSKNNNDLAFFTYDEKRKLGYGTQRERLGKDSIKPFDSCSLCLKPFISPMSCPKGHVFCKECILECILAQKKDIQRKLAAHELQTKQEKEEEEEKA AAQRARELEAFDQQNHGAVPQYTNDRNQSQDNNNFHGANSVKATSYEEEALRTMKAFWLPSATPGAALKLTAPSLHTTCPEGSEKLTMKSLFPVHMTEDT SEGKSGHLDKKYLCPSCKVTLTNTVTLVALSSCGHVFCKKCGDKFVAVDKVCLVCSKGCKGKNLVQLEKGGTGFAGHDDHLVASDFKHLGSGSGLGLVRP SSKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	0	1
AT3G52220			unknown protein		Lus10039101 [exp]	1.4	0.9453
AT3G11810			unknown protein		Lus10037134 [exp]	4.5	0.9212
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	5.6	0.8926
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	6.3	0.9375
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	6.9	0.9234
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	8.1	0.9271
AT1G77180		SKIP	chromatin protein family (.1.2...		Lus10039685 [exp]	12.0	0.8627
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10010926 [exp]	12.4	0.8949
AT5G23590			DNAJ heat shock N-terminal dom...		Lus10027828 [exp]	14.4	0.9041
AT3G03330			NAD(P)-binding Rossmann-fold s...		Lus10026851 [exp]	16.6	0.8793

Compare expression of checked genes

Lus10018409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.