Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11380 258 / 7e-87 PLAC8 family protein (.1) AT5G05350 66 / 4e-12 PLAC8 family protein (.1) AT3G10980 56 / 6e-09 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT2G40935 52 / 5e-08 PLAC8 family protein (.1.2.3) AT1G52200 50 / 2e-07 PLAC8 family protein (.1) AT1G14870 47 / 2e-06 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18470 46 / 2e-06 PLAC8 family protein (.1) AT2G45010 47 / 3e-06 PLAC8 family protein (.1.2) AT5G35525 46 / 3e-06 PLAC8 family protein (.1) AT1G14880 44 / 1e-05 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002586 [exp] 394 / 2e-140 AT1G11380 273 / 1e-92 PLAC8 family protein (.1) Lus10001260 [exp] 67 / 2e-12 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10012212 [exp] 64 / 2e-11 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10010219 [exp] 57 / 3e-09 AT3G10980 598 / 0.0 PLAC8 family protein (.1) Lus10017417 [exp] 57 / 3e-09 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10043325 [exp] 54 / 1e-08 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10019478 [exp] 53 / 3e-08 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10005257 [exp] 52 / 4e-08 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10004063 [exp] 51 / 4e-08 AT1G68630 132 / 2e-40 PLAC8 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040100 [exp] 288 / 1e-98 AT1G11380 280 / 5e-95 PLAC8 family protein (.1) Potri.004G026700 [exp] 270 / 2e-91 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.016G129700 [exp] 72 / 2e-14 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.010G182100 [exp] 63 / 3e-11 AT3G10980 670 / 0.0 PLAC8 family protein (.1) Potri.006G024900 [exp] 56 / 2e-09 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3) Potri.008G075300 [exp] 56 / 6e-09 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.012G092200 [exp] 52 / 3e-08 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 50 / 2e-07 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G108800 [exp] 48 / 1e-06 AT1G14870 179 / 8e-58 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 45 / 1e-05 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [flax] [poplar] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Lus10018410 pacid=23162173 polypeptide=Lus10018410 locus=Lus10018410.g ID=Lus10018410.BGIv1.0 annot-version=v1.0 ATGGGGGAATTTTCCGTTGTGGGCGGCGACGGCGGCGATAATGGCCGGAATAAGGAGGAGGTGGAGGAGAAGAAGCTGATTGGGGAGGCGGCGACGGCGG TGATTGATTTCAACCTGCTCTGCTCCACTGTGGCGATGCAGACGGAGGGGAAATGGACGAAGCTCTGCCAAGACGAGGAGGAAGGTGCGGAATTTTACGG CGGCGGTGGGGTTTTTAGGATGTGGGAAGGTGGTGTTCTTGATTTCTGCGACGACCGCCGCCTTGCCGTGGAATCATTCTGTTGTCCTTGCTATAGATTC GGGAAGAACATGAGACGGGCAGGTTTCGGATCATGCTTTCTCCAGGCAACTGTGTACTACATTCTAGCTCTATGTGCTCTGCTCAACATCGTAGCCTTCT TCGTAACCAAGAGGCATTGCTTCGTGTACCTAGCAATCGGGTTTGCGGTCCTGATTGGTATCTACCTAGGGTTCTTCAGGACACAGATTAAGGAGAAGTT CAACATCAGGGGTAGCGAAAGTGCGTTGGACGATTGCTTCTACCATCTTTTGTGTCCGCTCTGTGCACTAAGCCAGGAGGCTAGGACATTAGAGATGAAC AATGTGCAGGAAGGGACGTGGCATGGTCCCGGGGACACATTATGCCTAGGCCGGTATAGCGAAGGGAACCATTCTTACTCACAACTTCACCCTCCTGCCA TTCTCTCGACTGACGCCATCAGCAGCATAGAAGATCAGTAG
AA sequence Show only first row Show all	>Lus10018410 pacid=23162173 polypeptide=Lus10018410 locus=Lus10018410.g ID=Lus10018410.BGIv1.0 annot-version=v1.0 MGEFSVVGGDGGDNGRNKEEVEEKKLIGEAATAVIDFNLLCSTVAMQTEGKWTKLCQDEEEGAEFYGGGGVFRMWEGGVLDFCDDRRLAVESFCCPCYRF GKNMRRAGFGSCFLQATVYYILALCALLNIVAFFVTKRHCFVYLAIGFAVLIGIYLGFFRTQIKEKFNIRGSESALDDCFYHLLCPLCALSQEARTLEMN NVQEGTWHGPGDTLCLGRYSEGNHSYSQLHPPAILSTDAISSIEDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	0	1
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	1.0	0.9871
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	1.4	0.9868
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	1.7	0.9857
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10028247 [exp]	3.2	0.9846
					Lus10015413 [exp]	3.2	0.9789
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Lus10006498 [exp]	3.5	0.9850
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Lus10036978 [exp]	4.2	0.9821
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	4.6	0.9816
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Lus10017516 [exp]	4.9	0.9811
AT3G56310			Melibiase family protein (.1.2...		Lus10034218 [exp]	5.7	0.9751

Compare expression of checked genes

Lus10018410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.