Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03270 151 / 6e-44 CYCD6;1 Cyclin D6;1 (.1) AT1G70210 117 / 1e-30 ATCYCD1;1, CYCD1;1 CYCLIN D1;1 (.1) AT5G65420 100 / 1e-24 CYCD4;1 CYCLIN D4;1 (.1.2.3) AT4G34160 93 / 2e-21 CYCD3;1 CYCLIN D3;1 (.1) AT5G10440 87 / 1e-19 CYCD4;2 cyclin d4;2 (.1) AT5G67260 83 / 6e-18 CYCD3;2 CYCLIN D3;2 (.1) AT2G22490 81 / 2e-17 CYCD2;1, ATCYCD2;1 Cyclin D2;1 (.1.2) AT3G50070 71 / 6e-14 CYCD3;3 CYCLIN D3;3 (.1) AT4G37630 64 / 2e-11 CYCD5;1 cyclin d5;1 (.1.2) AT5G02110 54 / 3e-08 CYCD7;1 CYCLIN D7;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002587 [exp] 509 / 0 AT4G03270 169 / 8e-51 Cyclin D6;1 (.1) Lus10039738 [exp] 178 / 2e-53 AT4G03270 243 / 1e-78 Cyclin D6;1 (.1) Lus10033736 [exp] 162 / 2e-47 AT4G03270 221 / 5e-70 Cyclin D6;1 (.1) Lus10031608 [exp] 137 / 6e-38 AT4G03270 211 / 4e-66 Cyclin D6;1 (.1) Lus10018520 [exp] 116 / 2e-30 AT4G03270 163 / 4e-48 Cyclin D6;1 (.1) Lus10010709 [exp] 106 / 3e-26 AT1G70210 375 / 4e-130 CYCLIN D1;1 (.1) Lus10029194 [exp] 103 / 1e-25 AT1G70210 367 / 2e-127 CYCLIN D1;1 (.1) Lus10014089 [exp] 84 / 4e-18 AT4G34160 332 / 2e-112 CYCLIN D3;1 (.1) Lus10019825 [exp] 83 / 7e-18 AT4G34160 332 / 4e-112 CYCLIN D3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032100 [exp] 236 / 1e-76 AT4G03270 216 / 6e-69 Cyclin D6;1 (.1) Potri.011G040900 [exp] 229 / 7e-74 AT4G03270 213 / 1e-67 Cyclin D6;1 (.1) Potri.011G040500 [exp] 220 / 4e-71 AT4G03270 178 / 7e-55 Cyclin D6;1 (.1) Potri.019G118600 [exp] 196 / 6e-61 AT4G03270 244 / 2e-79 Cyclin D6;1 (.1) Potri.013G149000 [exp] 186 / 2e-57 AT4G03270 231 / 1e-74 Cyclin D6;1 (.1) Potri.008G146600 [exp] 107 / 4e-27 AT1G70210 370 / 3e-128 CYCLIN D1;1 (.1) Potri.010G095200 [exp] 107 / 5e-27 AT1G70210 374 / 6e-130 CYCLIN D1;1 (.1) Potri.002G103500 [exp] 107 / 7e-27 AT2G22490 262 / 3e-85 Cyclin D2;1 (.1.2) Potri.005G157800 [exp] 98 / 1e-23 AT5G65420 228 / 2e-73 CYCLIN D4;1 (.1.2.3) Potri.007G055300 [exp] 96 / 1e-22 AT4G37630 198 / 3e-61 cyclin d5;1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018411 pacid=23162128 polypeptide=Lus10018411 locus=Lus10018411.g ID=Lus10018411.BGIv1.0 annot-version=v1.0 ATGGAGTTTGATCTTCTCAACCCACTGATCAGCTCGGCCGAACCCAAAGAACCCACCAAACCGATCCTTGCCCTGTTCTCTTCAGAGTCTGATCACATGA CTTCTTCCTACTCCTCTGTCCCTTACGCCTCGTTTCGAAAAGAAGCAATCTTCACTCTCGAATCCGTTTCGAAAGCGGATTCTGCAGACCCCTTTGTCCC TTACTTGGCTGTAAACTACATGGATCGCTTCGCCTCGGAGCTTCCTTCGTCTCTGGAGGGTAGGCCTTGGGTTTTGCCCCTTGTTGCCGTCTCTTGCCTC TCATTGGCTGCGAAAATGAGGGATTTCGAATTTTCCGTCTCGAAATATCAGAATGTAGTTTCTTTTGACGAGAAGACAGTGAACAGAATGGAAGCATTGA TTCTTGATGCACTGGGTTGGAGGATGAGGTCCATAACTCCATTCTCTTTCCTTCATTTCTTCTCGTCCATGGTCGAACCAAAGGTTTCGACCGGTCCAGT AACAGACCGTGCGAAAGAGATTGTCTTCAAGGCACAACATGAATTCAGTCTGCTGGAGTTCAAACCATCTGTAGTGGCAGCAGCTGCATCTCTGATAGCA TGTCAGGAATTGTTCCCTTTGGAATTCCTCCCATTACATGGCTCAATATTTGCTTCTAAACTTGTAAATATGGACAATGTGGAGAGATGCATAAACAATA TACAGGAAATGATTTGCGAGGAATCTACGGTAGATTCGGAAACTCCATCTAGCATGTCGACTTGGAATTCTGATAGTGAGGTGAACAGCTTCACGCCAAA CTCCGTCACCACCGCTTCCAATGCGGAGAATACTCCCATGAAGCGCCGAAAGATTAATTTTGCCTAG
AA sequence Show only first row Show all	>Lus10018411 pacid=23162128 polypeptide=Lus10018411 locus=Lus10018411.g ID=Lus10018411.BGIv1.0 annot-version=v1.0 MEFDLLNPLISSAEPKEPTKPILALFSSESDHMTSSYSSVPYASFRKEAIFTLESVSKADSADPFVPYLAVNYMDRFASELPSSLEGRPWVLPLVAVSCL SLAAKMRDFEFSVSKYQNVVSFDEKTVNRMEALILDALGWRMRSITPFSFLHFFSSMVEPKVSTGPVTDRAKEIVFKAQHEFSLLEFKPSVVAAAASLIA CQELFPLEFLPLHGSIFASKLVNMDNVERCINNIQEMICEESTVDSETPSSMSTWNSDSEVNSFTPNSVTTASNAENTPMKRRKINFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018411 [exp]	0	1
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	2.2	0.7918
AT1G03430		AHP5	histidine-containing phosphotr...		Lus10003256 [exp]	3.0	0.7284
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10028440 [exp]	5.1	0.7475
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10000974 [exp]	16.2	0.6542
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031236 [exp]	19.8	0.6610
					Lus10000169 [exp]	21.8	0.6963
					Lus10038619 [exp]	24.1	0.6959
AT3G49055			unknown protein		Lus10021563 [exp]	28.6	0.6036
AT1G13030			sphere organelles protein-rela...		Lus10006465 [exp]	31.2	0.7052
					Lus10007080 [exp]	34.2	0.6360

Compare expression of checked genes

Lus10018411 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.