Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05150 287 / 3e-92 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G01190 132 / 4e-33 PDE331 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) AT5G64430 127 / 8e-32 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G09620 124 / 9e-31 Octicosapeptide/Phox/Bem1p family protein (.1) AT3G46920 115 / 3e-27 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G49920 110 / 3e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 114 / 8e-27 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G18230 113 / 9e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT2G35050 110 / 2e-25 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT3G26510 100 / 2e-24 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002588 [exp] 824 / 0 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10042925 [exp] 140 / 2e-36 AT5G09620 236 / 7e-72 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 131 / 2e-35 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 127 / 5e-31 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10034643 [exp] 120 / 2e-30 AT2G01190 186 / 1e-53 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10001314 [exp] 119 / 6e-29 AT5G57610 393 / 1e-125 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10007965 [exp] 116 / 2e-28 AT2G01190 184 / 1e-51 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019577 [exp] 119 / 3e-28 AT3G46920 606 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10007952 [exp] 118 / 3e-28 AT2G01190 444 / 1e-146 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032200 [exp] 412 / 1e-141 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.011G041100 [exp] 383 / 5e-130 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G285800 [exp] 140 / 9e-37 AT5G64430 270 / 8e-85 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.012G053500 [exp] 139 / 1e-35 AT3G18230 298 / 6e-92 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 135 / 8e-35 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.010G119500 [exp] 117 / 6e-28 AT2G01190 388 / 1e-124 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.008G124700 [exp] 117 / 8e-28 AT2G01190 430 / 3e-141 PIGMENT DEFECTIVE 331, Octicosapeptide/Phox/Bem1p family protein (.1) Potri.003G176100 [exp] 113 / 1e-26 AT1G04700 725 / 0.0 PB1 domain-containing protein tyrosine kinase (.1) Potri.008G186500 [exp] 107 / 1e-26 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.001G052000 [exp] 113 / 2e-26 AT1G04700 721 / 0.0 PB1 domain-containing protein tyrosine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10018412 pacid=23162212 polypeptide=Lus10018412 locus=Lus10018412.g ID=Lus10018412.BGIv1.0 annot-version=v1.0 ATGTCCCCCCACCACCAGACAGCCCTGGAATCCGCCGCCACGGACTCGGTCGCGTCCTCCCCACGCTCCGACATCCACGGCGATGCGCCTCCGCGAGTCC GCTTCATGTGCAGCTTCGGCGGCAAGATCCTCCCCCGCCCGCACGACAACCTCCTCCGCTACGTTGGCGGAGAGACCCGCATGGTCGCCGTCCACCGATC CACCACTTTCTCCGCCCTCCTCACCAAGCTGTCTAAGATTGCCGGTTTCGCCGCCGTCAACGTGAAATACCAGCTCCCTAACGAGGATCTCGACGCGCTG ATCTCAGTCTCCACCGACGAGGACGTGGAGAACATGATGGACGAGATAACTGACGAGAGCGCTCCCGTCGCGCTAAATCACAGCCCCCGATCGGCTCGGC TCCGGCTATTCCTCTCCCCCAGCGGCGACCCGGTTTCTCGAACCGGGTCGATCAGCTCGCTTTTGGATGGGTCGACCAATCGGGAGCACTGGTTCTTGGA CGCGCTCAATTCGGGTCGGAGCTTGGAGCGCGTGAGGTCCGAAGCTTCTTCGATCGTGTCGGAGATGCCTGATTACCTGTTCGGGCTTGAGAACTCCGAC GACACCGTTTCCCATGGGAGGGAGCAGAAGCTGCGTAACAAGATGATGTTCAACGACAGCGTTTCGGCTTCCGATCCCGGTTCGCCGGCTCCGGTCATTT CCTCTCCGTTCTGCTCAACTTCATCAGCTGTGCCGTCAATCCCTACTGTTTCCTCAATTCCGGATCTGCCCCCGGTTAAAACCCGGCCCGAGACGCCTCA AACGCCCGAGCCGGTCGTCCAACGAACAATTTCTTTCTCCGACCCGATCGAGACCCAACCGGGTCAACAGCAACAGCCTAGGTACGCCGTGCAGTATATT CCGGAGCAACAACAACAACATTACTCGGGTCCCGCTGCTCCGGTTCAGCATATTCCGGTTTATTACGTCCCGGGACCCGGACCGGTTCAACAACAGGGAA ACGTTTCGGTTCAAATGCAAGGGAATGTTCCAGTTCAAATGCAAGGGAACCCTCCGATTCAAATGCAGGGGAACGTTCCCGTTCAAATGCGGGGACAGTA CGTTCAGCAATACTCTGTCCCCGCGGGTCAAATGTACCATCAGCAGCAACAGGTTCCAGGTATGGGTCAGGTGTATGGGGCGATGCGAACTGACCAGTAC GAAGGGGCAAGGATGGTTTCAGACGGGATGAACCAACCCCAACAAGTTTATTATGGAGTTCGAGGTGGGAACGCGGTTATGGCGGGTCAGGGTCATCACC CGGGTATGGTTATGAGTGCTGAGGAGATGCATAAGGCCGGGTTGGACCCGAAGTCGGGTCGGGGACCGGGGCCTTGA
AA sequence Show only first row Show all	>Lus10018412 pacid=23162212 polypeptide=Lus10018412 locus=Lus10018412.g ID=Lus10018412.BGIv1.0 annot-version=v1.0 MSPHHQTALESAATDSVASSPRSDIHGDAPPRVRFMCSFGGKILPRPHDNLLRYVGGETRMVAVHRSTTFSALLTKLSKIAGFAAVNVKYQLPNEDLDAL ISVSTDEDVENMMDEITDESAPVALNHSPRSARLRLFLSPSGDPVSRTGSISSLLDGSTNREHWFLDALNSGRSLERVRSEASSIVSEMPDYLFGLENSD DTVSHGREQKLRNKMMFNDSVSASDPGSPAPVISSPFCSTSSAVPSIPTVSSIPDLPPVKTRPETPQTPEPVVQRTISFSDPIETQPGQQQQPRYAVQYI PEQQQQHYSGPAAPVQHIPVYYVPGPGPVQQQGNVSVQMQGNVPVQMQGNPPIQMQGNVPVQMRGQYVQQYSVPAGQMYHQQQQVPGMGQVYGAMRTDQY EGARMVSDGMNQPQQVYYGVRGGNAVMAGQGHHPGMVMSAEEMHKAGLDPKSGRGPGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10018412 [exp]	0	1
AT3G53030		SRPK4	ser/arg-rich protein kinase 4 ...		Lus10005364 [exp]	3.2	0.7933
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	6.6	0.7655
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	15.5	0.7470
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Lus10002588 [exp]	16.1	0.7457
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	18.8	0.7289
AT2G28370			Uncharacterised protein family...		Lus10037399 [exp]	22.8	0.7543
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10028127 [exp]	25.4	0.7137
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	28.8	0.6591
					Lus10036643 [exp]	31.1	0.6326
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10025425 [exp]	31.6	0.7246

Compare expression of checked genes

Lus10018412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.