Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05120 577 / 0 FUR1, ENT3, FLUOROURIDINEINSENSITIVE1, ATENT3 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) AT4G05110 561 / 0 ATENT6 equilibrative nucleoside transporter 6 (.1) AT4G05140 547 / 0 Nucleoside transporter family protein (.1) AT4G05130 518 / 0 ATENT4 equilibrative nucleoside transporter 4 (.1) AT1G61630 483 / 1e-169 ATENT7 equilibrative nucleoside transporter 7 (.1) AT3G09990 450 / 3e-156 Nucleoside transporter family protein (.1) AT1G70330 174 / 5e-49 "ENT1,AT", ENT1,AT, ATENT1 equilibrative nucleotide transporter 1 (.1) AT1G02630 155 / 2e-42 Nucleoside transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002589 [exp] 801 / 0 AT4G05120 609 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018414 [exp] 582 / 0 AT4G05120 548 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10039741 [exp] 561 / 0 AT4G05120 580 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10018523 [exp] 560 / 0 AT4G05120 579 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10020079 [exp] 509 / 3e-180 AT4G05120 392 / 7e-135 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Lus10013002 [exp] 167 / 2e-46 AT1G70330 534 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10029162 [exp] 166 / 3e-46 AT1G70330 551 / 0.0 equilibrative nucleotide transporter 1 (.1) Lus10030104 [exp] 165 / 5e-46 AT1G02630 526 / 0.0 Nucleoside transporter family protein (.1.2) Lus10002590 [exp] 102 / 4e-26 AT4G05130 97 / 2e-25 equilibrative nucleoside transporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032300 [exp] 623 / 0 AT4G05120 586 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032400 [exp] 612 / 0 AT4G05120 584 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.019G118400 [exp] 585 / 0 AT4G05120 520 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.011G041112 [exp] 568 / 0 AT4G05120 540 / 0.0 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.004G032500 [exp] 483 / 2e-169 AT4G05120 457 / 2e-160 FUDR RESISTANT 1, EQUILIBRATIVE NUCLEOSIDE TRANSPORTER 3, Major facilitator superfamily protein (.1) Potri.012G058900 [exp] 179 / 3e-51 AT1G70330 530 / 0.0 equilibrative nucleotide transporter 1 (.1) Potri.018G130000 [exp] 157 / 5e-43 AT1G02630 452 / 5e-159 Nucleoside transporter family protein (.1.2) Potri.006G068100 [exp] 148 / 7e-40 AT1G02630 432 / 6e-151 Nucleoside transporter family protein (.1.2) Potri.018G130200 [exp] 77 / 3e-16 AT1G02630 212 / 5e-68 Nucleoside transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF01733 [flax] [poplar] Nucleoside_tran Nucleoside transporter
Representative CDS sequence Show only first row Show all	>Lus10018413 pacid=23162102 polypeptide=Lus10018413 locus=Lus10018413.g ID=Lus10018413.BGIv1.0 annot-version=v1.0 ATGAGCATTCATCAGGTCAAATGGGGAGTAGCTATGGAGGTTGCTGCTGCTGAAGAACACGACATTATAAGTCATAACCGTGTCGACGCAGCGAAAGAAG TGGCTATGGAGGTTGATGGTGGGGGAGGAGATGAAGAGCCGGCCATTGTCGAGGAGATAGCCATGGAGGCTGCTAATGGAGAACCCGCCAAGCTCGAGGG GAAATACAAGGCCTTGTTGGTGTTTTGGATTCTGGGATTCGGTTCTCTGGTTTCCTGGAACAGTATGTTGACTATAGGAGATTACTACTACAACTTGTTC CCGAAATACCACCCTTCAAGGGTGCTCACATTAGTCTACCAACCATTCGCACTCGGTACCATGGCGATTTTAGCTTACCACGAGTCGAAGATCGATACGA GGTTGAGGAACGTTGCTGGATATCTCCTCTTCTTCGCCAGCACTTTGATGCTGCTCGTTCTTGATCTGGCCACATCGGGAAGAGGAGGAGTCGGTCCGTT CGTGGGGATATGTCTGATCGTCGGAGCGTTTGGAGTCGCTGATGCTCACGTTCAAGGCGGTATGGTCGGGGATTTGTCGTTCATGTGCCCTGAATTCATG CAGTCCTTCTTTGCTGGCCTGGCAGCATCTGGTGTGATGACTTCTGCCTTACGGCTGATAACAAAAGCTGCATTCGAGAAGGCTCACAACGGTCTTCGCA AGGGAGTTCTGCTTTTCCTTGCGATTGCAGCGTTCATGGAGTTCCTGTGCGTACTGCTCTACACGTTATACGTCCCGAAACTCCCGATCGTCAAGTACTA CCGCACCAAGGCGGCCAAAGAAGGTTCCAAGACGGTTTCTGCCGATCTCAAGGCTGCTGGCATTCAGACACCTTCAGAGCAGTTGGGAGACGATAGCAAG CCGATGGAGCGATTGACCATGAGGCAGCTTCTGCATAAGAACTGGGATTATGCACTTGATCTCTACCTTATCTATGTTCTGACTCTGTCGATCTTCCCGG GATTCATTTCCGAGGACACCGGCACTCACCAATTGGGAAGCTGGTACATTCTGGTGTTGATCGCTGCGTATAACGCGTGGGACCTCGTCGGTCGATATAT CCCCTTGATCGAGTGCATCAAGTTGAAGTCCCGAAACTGGTTGACGATCACAATACTTTCTCGATTCCTGCTCGTACCGGCTTTCTACTTTACCGCCAAA TACGGAGACCAGGGATACATGATCGCCCTCACTTCGTTTCTAGGGCTCACTAACGGCTACCTCACCGTCTGTGTCATGACATTGGCACCCAAGGGTTACA CGGGTCCGGAGCAGAATGCGCTCGGGAATCTGTTGGTTCTGTTCTTGCTAGCCGGGATCTTCTCCGGTGTGGTTCTCGACTGGATGTGGCTGATCGGCAA GAAGAATGCATTCTGA
AA sequence Show only first row Show all	>Lus10018413 pacid=23162102 polypeptide=Lus10018413 locus=Lus10018413.g ID=Lus10018413.BGIv1.0 annot-version=v1.0 MSIHQVKWGVAMEVAAAEEHDIISHNRVDAAKEVAMEVDGGGGDEEPAIVEEIAMEAANGEPAKLEGKYKALLVFWILGFGSLVSWNSMLTIGDYYYNLF PKYHPSRVLTLVYQPFALGTMAILAYHESKIDTRLRNVAGYLLFFASTLMLLVLDLATSGRGGVGPFVGICLIVGAFGVADAHVQGGMVGDLSFMCPEFM QSFFAGLAASGVMTSALRLITKAAFEKAHNGLRKGVLLFLAIAAFMEFLCVLLYTLYVPKLPIVKYYRTKAAKEGSKTVSADLKAAGIQTPSEQLGDDSK PMERLTMRQLLHKNWDYALDLYLIYVLTLSIFPGFISEDTGTHQLGSWYILVLIAAYNAWDLVGRYIPLIECIKLKSRNWLTITILSRFLLVPAFYFTAK YGDQGYMIALTSFLGLTNGYLTVCVMTLAPKGYTGPEQNALGNLLVLFLLAGIFSGVVLDWMWLIGKKNAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018413 [exp]	0	1
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10040464 [exp]	1.4	0.8281
AT3G62860			alpha/beta-Hydrolases superfam...		Lus10030366 [exp]	3.3	0.7698
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10037670 [exp]	4.5	0.8243
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019605 [exp]	5.3	0.8039
AT5G40460			unknown protein		Lus10002514 [exp]	8.5	0.7758
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003452 [exp]	9.3	0.7322
AT1G13790		FDM4	factor of DNA methylation 4, X...		Lus10032933 [exp]	9.7	0.7957
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10012075 [exp]	10.4	0.7334
AT3G60380			unknown protein		Lus10028193 [exp]	12.3	0.7417
AT5G03670			unknown protein		Lus10027723 [exp]	14.7	0.7774

Compare expression of checked genes

Lus10018413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.