Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001468 [exp] 38 / 0.0005 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018415 pacid=23162136 polypeptide=Lus10018415 locus=Lus10018415.g ID=Lus10018415.BGIv1.0 annot-version=v1.0 ATGGCTCAAAGGAGACACGGAATCGGTCGTGCATATTATCAAGAGACCCGAGAACGAGAAGTGGTTGAGGTGCGCAATCACAAAGAGGCATGTGAACGCA TCAACATGATCATCCAAGAGATCGAGAACTGCATCGTGAGTCATGTCTATCGAGAAGGGAACAGAGCCGCAGACAAGTTTGCCAAAATGGGACATGGGTT GACGAAGCCTAAGGTTTGGCGGCATCATCCGCCGAACGATGACGTTTTGTTGAGGATCGTTCGTGAGGATGCCGTTAGGAAGATCATCAGTCGAAGAAGT TAA
AA sequence Show only first row Show all	>Lus10018415 pacid=23162136 polypeptide=Lus10018415 locus=Lus10018415.g ID=Lus10018415.BGIv1.0 annot-version=v1.0 MAQRRHGIGRAYYQETREREVVEVRNHKEACERINMIIQEIENCIVSHVYREGNRAADKFAKMGHGLTKPKVWRHHPPNDDVLLRIVREDAVRKIISRRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018415 [exp]	0	1
AT3G45280		ATSYP72, SYP72	syntaxin of plants 72 (.1)		Lus10036118 [exp]	1.7	0.8100
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	11.1	0.7134
AT3G13445		TFIID-1, TBP1	TRANSCRIPTION FACTOR IID-1, TA...		Lus10031531 [exp]	17.8	0.7126
AT5G40350	MYB	ATMYB24	myb domain protein 24 (.1)		Lus10032129 [exp]	20.6	0.7126
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10032793 [exp]	23.0	0.7126
AT1G31885		NIP3;1	NOD26-like intrinsic protein 3...		Lus10033447 [exp]	25.2	0.7126
AT5G59540			2-oxoglutarate (2OG) and Fe(II...		Lus10033879 [exp]	27.2	0.7126
					Lus10024141 [exp]	29.1	0.7126
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	30.9	0.7126
AT5G05280			RING/U-box superfamily protein...		Lus10036380 [exp]	32.6	0.7126

Compare expression of checked genes

Lus10018415 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.