Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11390 818 / 0 Protein kinase superfamily protein (.1) AT1G61640 716 / 0 Protein kinase superfamily protein (.1.2) AT3G07700 133 / 2e-32 Protein kinase superfamily protein (.1.2.3) AT5G64940 121 / 1e-28 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT1G79600 117 / 2e-27 Protein kinase superfamily protein (.1) AT1G65950 114 / 2e-26 Protein kinase superfamily protein (.1) AT1G71810 113 / 5e-26 Protein kinase superfamily protein (.1) AT5G24970 113 / 8e-26 Protein kinase superfamily protein (.1.2) AT4G24810 103 / 2e-23 Protein kinase superfamily protein (.1.2.3) AT5G50330 102 / 8e-23 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002591 [exp] 1226 / 0 AT1G11390 796 / 0.0 Protein kinase superfamily protein (.1) Lus10037869 [exp] 680 / 0 AT1G11390 692 / 0.0 Protein kinase superfamily protein (.1) Lus10006363 [exp] 127 / 3e-30 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10012317 [exp] 127 / 3e-30 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10036636 [exp] 119 / 9e-28 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 113 / 8e-26 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10020103 [exp] 108 / 4e-24 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10035701 [exp] 105 / 2e-23 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10041406 [exp] 103 / 1e-22 AT2G39190 892 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G032800 [exp] 910 / 0 AT1G11390 860 / 0.0 Protein kinase superfamily protein (.1) Potri.011G041500 [exp] 891 / 0 AT1G11390 879 / 0.0 Protein kinase superfamily protein (.1) Potri.014G168600 [exp] 136 / 3e-33 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G083200 [exp] 117 / 4e-27 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.004G075100 [exp] 114 / 2e-26 AT1G65950 660 / 0.0 Protein kinase superfamily protein (.1) Potri.007G082500 [exp] 113 / 6e-26 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.002G061000 [exp] 111 / 3e-25 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 100 / 1e-21 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.015G091000 [exp] 98 / 2e-21 AT5G50330 752 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G000100 [exp] 96 / 3e-20 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10018416 pacid=23162222 polypeptide=Lus10018416 locus=Lus10018416.g ID=Lus10018416.BGIv1.0 annot-version=v1.0 ATGCTCGTTGCCGCGACGTCGTTAGCTTCTTCATCAAGAATACTTCGCTTTCGTGATTCCGATTCGCCATGTCAAGGTCCGAGGATTGCAAGTGCTGTTG CTGAAAGAGACAGTAGTATTATTCATTCGGGGTTTAGGAGATATGGAGGTCTAGCTCATCTGGGTTCACGTTTGCCTCAGTTTAGACACTCTGGTGGTCG TTATCAGATTCCACGGGTAGGATCTTTGGGGTTCGTACAGTATGCAGTGAAGCATCAATTTGGTAGGAGCTTCGTTTCTAGTCCTTATTGTGAGTACAAT GCGTATCAGGCATGGAGGAGGCTCCTTGCGAGAGCTGGCGACAGTCCCACTGTTATAAGCAAGATAGCTCAAGCTTTCACCTTGGCTTTGACGAGATCGC CTCTCCTGGTGCCAGGTGTATTGGCACTAACATGCGGGAAAATGGCATGGGCCTCTGCCGGGGATACGTATCAGTATCCTTACCCATTGGCAGATTCTCT GTACAATCGCGCACAAGATGGTCGAGCTTATGTTACATCATTGGTGTATTCTGTTGTGGAAGGTGTTATCTTGCTAGTGAGAGCTTGGTACTTGTCGGTT CTGTTCACACCGACTTTGTTAATGGCGCCATTTATGGACATGTTCGGACCTGGATTTCACCGGTTTTTCCTTCAGGTTGTGCTTCGGACGCTGGAGCTAG CAGGTCCAGCTTTTATCAAATGGGGTCAATGGGCAGCGACTCGACCCGATCTCTTCCCAAGAGATCTCTGCACGAAGCTCTCTGAGCTTCAAACCAAAGC TCCTAAACATAGCTATGCCTACACGAAGAAGACGATCGAAAGAGCATTCGGGCGTAAGATATCCGAAATCTTTGAAGGGTTCGAGGAACAACCGGTTGCT TCGGGAAGTATCGCCCAAGTTCATCGAGCCTCTTTGAGATTCCGGTACCCGGGTCAGAAGCAGGTGAAACCCATGGTTGTGGCGGTGAAAGTTAGACACC CGGGTGTTGGAGAATCGATCCGTAGAGATTTCACCATCATCAACTTAGTAGCTAAGATGTCGAGATTCGTCCCTGCTTTGAATTGGTTGAGATTAGATGA GAGTGTGCAGCAGTTTGGTGTTTTCATGATGTCTCAAGTTGATCTCGCTAGAGAAGCGGCTCATTTAAGCCGGTTCATCTACAATTTCAGAAGCTGGAAA GATGTTTCCTTTCCCAAACCGGTTTACCCTCTGGTTCATCCCGCTGTCTTGGTCGAAACTTACGAGCAAGGCGAATGCGTTTCGCACTATGTCGATGACC TTGTCGGCCACGAACGTGTCAAAGCTGCACTTGCTCATATTGGAACTCATGCACTTCTCAAAATGCTTCTGGTGGACAACTTCATCCACGCAGACATGCA TCCAGGAAACATTCTTGTCCGAGTCGCGGCGCAGAACAAGCCATCTGTGAAGAAGCGGCTCTTCAAATCGAAGCCTCACGTCATTTTCCTTGACGTGGGA ATGACTGCCGAGCTCTCGAAGAACGATAGAGTCAACCTACTCGAATTCTTCAAAGCTGTTGCACGAAGAGATGGCCGTACTGCAGCAGAGTCTGCATTAC TGCTGTCGAAACAGCAGAAATGCCCGAATCCCAAGGCTTTCATCGCGGAAATGGAAGATGCATTCGACTTCTGGGGCACTCCTGAAGGAGATCTGGTCCA CCCAGCTGAATGCATGCAAGAACTGCTCGAGAAAGTGAGACGGCACAAGGTGAATATCGATGGCAATGTCTGCACCGTGATGGTCACCACTTTGGTTCTC GAGGGATGGCAGAGGAAGCTAGACCCGAGATATAACGTGATGCAGACGTTACAGACGCTGCTGCTTCGAACGGACTGGGCGAAGTCTCTGTCTTACACAA TCGACGGGCTGATGGCACCATAG
AA sequence Show only first row Show all	>Lus10018416 pacid=23162222 polypeptide=Lus10018416 locus=Lus10018416.g ID=Lus10018416.BGIv1.0 annot-version=v1.0 MLVAATSLASSSRILRFRDSDSPCQGPRIASAVAERDSSIIHSGFRRYGGLAHLGSRLPQFRHSGGRYQIPRVGSLGFVQYAVKHQFGRSFVSSPYCEYN AYQAWRRLLARAGDSPTVISKIAQAFTLALTRSPLLVPGVLALTCGKMAWASAGDTYQYPYPLADSLYNRAQDGRAYVTSLVYSVVEGVILLVRAWYLSV LFTPTLLMAPFMDMFGPGFHRFFLQVVLRTLELAGPAFIKWGQWAATRPDLFPRDLCTKLSELQTKAPKHSYAYTKKTIERAFGRKISEIFEGFEEQPVA SGSIAQVHRASLRFRYPGQKQVKPMVVAVKVRHPGVGESIRRDFTIINLVAKMSRFVPALNWLRLDESVQQFGVFMMSQVDLAREAAHLSRFIYNFRSWK DVSFPKPVYPLVHPAVLVETYEQGECVSHYVDDLVGHERVKAALAHIGTHALLKMLLVDNFIHADMHPGNILVRVAAQNKPSVKKRLFKSKPHVIFLDVG MTAELSKNDRVNLLEFFKAVARRDGRTAAESALLLSKQQKCPNPKAFIAEMEDAFDFWGTPEGDLVHPAECMQELLEKVRRHKVNIDGNVCTVMVTTLVL EGWQRKLDPRYNVMQTLQTLLLRTDWAKSLSYTIDGLMAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11390			Protein kinase superfamily pro...		Lus10018416 [exp]	0	1
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	1.0	0.8995
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	4.5	0.8685
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10041798 [exp]	4.9	0.8753
AT1G38065			O-fucosyltransferase family pr...		Lus10025631 [exp]	8.8	0.8626
AT4G36360		BGAL3	beta-galactosidase 3 (.1.2)		Lus10028348 [exp]	10.4	0.8631
AT4G03550		ATGSL5, PMR4, G...	POWDERY MILDEW RESISTANT 4, gl...		Lus10031648 [exp]	11.7	0.8972
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	12.6	0.8753
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	13.5	0.8511
AT1G38065			O-fucosyltransferase family pr...		Lus10028080 [exp]	15.3	0.8564
AT1G79090			unknown protein		Lus10031788 [exp]	16.0	0.8596

Compare expression of checked genes

Lus10018416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.