Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21450 363 / 6e-127 PapD-like superfamily protein (.1.2.3) AT5G54110 311 / 5e-107 ATMAMI membrane-associated mannitol-induced (.1) AT4G05060 301 / 5e-103 PapD-like superfamily protein (.1) AT2G45140 57 / 3e-09 PVA12 plant VAP homolog 12 (.1) AT5G47180 54 / 1e-08 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT3G60600 53 / 5e-08 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 53 / 6e-08 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT1G51270 48 / 5e-06 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT2G23830 44 / 2e-05 PapD-like superfamily protein (.1) AT1G08820 45 / 3e-05 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002595 [exp] 472 / 2e-170 AT4G21450 389 / 4e-137 PapD-like superfamily protein (.1.2.3) Lus10018534 [exp] 311 / 1e-106 AT4G21450 316 / 2e-108 PapD-like superfamily protein (.1.2.3) Lus10039757 [exp] 311 / 1e-106 AT4G21450 316 / 1e-108 PapD-like superfamily protein (.1.2.3) Lus10037873 [exp] 297 / 3e-101 AT5G54110 331 / 6e-115 membrane-associated mannitol-induced (.1) Lus10036495 [exp] 67 / 7e-13 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10010360 [exp] 64 / 8e-12 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10007463 [exp] 63 / 2e-11 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 64 / 4e-11 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10000591 [exp] 56 / 8e-09 AT5G47180 277 / 5e-95 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G041900 [exp] 380 / 8e-134 AT4G21450 359 / 2e-125 PapD-like superfamily protein (.1.2.3) Potri.004G033500 [exp] 351 / 1e-122 AT4G21450 358 / 3e-125 PapD-like superfamily protein (.1.2.3) Potri.019G116400 [exp] 307 / 2e-105 AT4G21450 270 / 1e-90 PapD-like superfamily protein (.1.2.3) Potri.011G126200 [exp] 306 / 6e-105 AT5G54110 288 / 5e-98 membrane-associated mannitol-induced (.1) Potri.013G147800 [exp] 300 / 6e-103 AT4G21450 266 / 5e-89 PapD-like superfamily protein (.1.2.3) Potri.001G408200 [exp] 298 / 1e-101 AT5G54110 322 / 3e-111 membrane-associated mannitol-induced (.1) Potri.014G060900 [exp] 63 / 2e-11 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.003G082500 [exp] 61 / 1e-10 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152100 [exp] 60 / 1e-10 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.001G152000 [exp] 59 / 4e-10 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [flax] [poplar] PapD-like PF00635 [flax] [poplar] Motile_Sperm MSP (Major sperm protein) domain
Representative CDS sequence Show only first row Show all	>Lus10018420 pacid=23162144 polypeptide=Lus10018420 locus=Lus10018420.g ID=Lus10018420.BGIv1.0 annot-version=v1.0 ATGGTCGAGAATAAGTCAACTACTGACAGCAACAACGGGAACAATAAAGTCTGGGGGTTCTTCAGGCTGCCGTTCAAACCCACGGCCACCAATCCCACTT CCTCCTCTTCCTCTTCCTCGTCGCAGCTCCACCACAGCCAGTATAATAATAACAATAATCAGAACGGCATGGAAGGATCTAATCATCAGAATCAGAATCA TCAGCAAGCTCAGCAGCAGACTCTAAATTCGGTCTCATCAGTTGCTAGATCGCTACTCCCGACTCGTCGCCGGCTCAAGCTCGATCCCGCTTCAAAGCTC TACTTTCCTTACGAGCCTGGGAAGCAGGTGAGGAGTGCTATCAAGATTAAGAACAGTAGCAAGTCTCATGTAGCGTTCAAGTTCCAAACGACTGCACCAA AGAGTTGTTTCATGCGCCCGCCGGGAGCCATTCTTGCTCCTGGAGAGAGTCTCATTGCCACTGTGTTCAAGTTTGTTGAGCACCCGGAGAACAATGAGAA GCCAATGGACCAGAAGAGCAGGGTTAAGTTCAAAATCATGAGCTTGAAGGTGAAAGGGCCGATGGACTATGTCCCCGAGCTGTTTGAGGAACAGAAGGAA CAAGTGGCAATAGAACAGATATTGCGGGTCATTTTTCTCGATCCTGCCCGCACAACCTCTTCTTTAGAGAAGTTGAACCGCCAACTAGCAGAGGCCGACG CTGCAGTCGAAGCCCGCAAGAAACCCCCAGAGGACGCCGGTCCAAGGATCATCGGCGAAGGACTCGTGATTGACGAATGGAAAGAGCGAAGGGAAAGATA CCTAGCTCGACAGCAGGTTGAAGGGGTCGACTCGGTATAG
AA sequence Show only first row Show all	>Lus10018420 pacid=23162144 polypeptide=Lus10018420 locus=Lus10018420.g ID=Lus10018420.BGIv1.0 annot-version=v1.0 MVENKSTTDSNNGNNKVWGFFRLPFKPTATNPTSSSSSSSSQLHHSQYNNNNNQNGMEGSNHQNQNHQQAQQQTLNSVSSVARSLLPTRRRLKLDPASKL YFPYEPGKQVRSAIKIKNSSKSHVAFKFQTTAPKSCFMRPPGAILAPGESLIATVFKFVEHPENNEKPMDQKSRVKFKIMSLKVKGPMDYVPELFEEQKE QVAIEQILRVIFLDPARTTSSLEKLNRQLAEADAAVEARKKPPEDAGPRIIGEGLVIDEWKERRERYLARQQVEGVDSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21450			PapD-like superfamily protein ...		Lus10018420 [exp]	0	1
AT4G21450			PapD-like superfamily protein ...		Lus10002595 [exp]	1.0	0.9461
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Lus10037141 [exp]	4.0	0.9055
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10008582 [exp]	10.1	0.8913
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	17.5	0.8835
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	23.9	0.8790
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	26.5	0.8809
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	27.0	0.8737
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	27.4	0.8766
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10016082 [exp]	31.7	0.8395
AT4G25680			PPPDE putative thiol peptidase...		Lus10014960 [exp]	32.7	0.8278

Compare expression of checked genes

Lus10018420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.