Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11260 756 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT4G21480 722 / 0 STP12 sugar transporter protein 12 (.1) AT3G19940 569 / 0 Major facilitator superfamily protein (.1) AT3G19930 563 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 557 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT1G50310 555 / 0 ATSTP9 sugar transporter 9 (.1) AT5G26340 542 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT4G02050 500 / 5e-174 STP7 sugar transporter protein 7 (.1) AT1G77210 480 / 2e-166 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT1G34580 467 / 5e-161 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002597 [exp] 877 / 0 AT1G11260 798 / 0.0 sugar transporter 1 (.1) Lus10013441 [exp] 581 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10010534 [exp] 528 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 527 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10042516 [exp] 523 / 0 AT1G11260 608 / 0.0 sugar transporter 1 (.1) Lus10040991 [exp] 520 / 0 AT3G19940 666 / 0.0 Major facilitator superfamily protein (.1) Lus10021924 [exp] 502 / 4e-174 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10036325 [exp] 482 / 8e-167 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10020934 [exp] 478 / 3e-165 AT1G34580 664 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033600 [exp] 769 / 0 AT1G11260 822 / 0.0 sugar transporter 1 (.1) Potri.011G042100 [exp] 764 / 0 AT1G11260 808 / 0.0 sugar transporter 1 (.1) Potri.005G090700 [exp] 605 / 0 AT3G19940 710 / 0.0 Major facilitator superfamily protein (.1) Potri.001G110400 [exp] 600 / 0 AT1G11260 658 / 0.0 sugar transporter 1 (.1) Potri.007G072800 [exp] 600 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 598 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 585 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 585 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.004G109765 [exp] 550 / 0 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 548 / 0 AT1G11260 629 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10018422 pacid=23162088 polypeptide=Lus10018422 locus=Lus10018422.g ID=Lus10018422.BGIv1.0 annot-version=v1.0 ATGCCGGCCGTCGCAATCGCCACCGGCGGTGGCGGGAAGGAGTACCCGGGAAACCTCACTCCTTTCGTCCTCGTCACCTGCATCGTCGCCGCCATGGGTG GACTCATCTTCGGCTACGACATCGGAATCTCCGGTGGAGTGACGTCGATGAACTCGTTCCTGAAGAAATTTTTTCCGGCGGTGTACCGGAAGAAGAACGA AGAAGGCGATAACAAAGACATGTACTGCCAGTACGATAGCCAGACGCTGACCATGTTCACCTCGTCGCTGTATCTGGCGGCGCTGCTGTCATCGATCGTC GCTTCTACGGTGACGAGGGTGTTCGGGCGGAAGCTGTCGATGCTCTTCGGAGGTGTGCTCTTCTTCGGCGGAGCTCTCATCAACGGTCTAGCCCAGAACG TCTTGATGATCTATCTCGGCCGGATCTTGCTTGGTTTCGGCATCGGTTTCGCCAATCAGTCGGTACCACTGTACCTGTCTGAGATGGCTCCCTACAGGTA TAGAGGAGCCCTGAACATCGGCTTCCAGCTCTCGATAACGATCGGAATCCTCGTTGCAAACGTACTCAACTACTTCTTCAGCAAGATCTCGTGGGGATGG AGGCTGAGCTTGGGAGGCGCGATGGTACCCGCATTGATCATCACGGTCGGGTCCTTGGTCCTCCCCGACACACCGAATTCCCTGATTGAGCGTGGCAACC ACGATGAGGCCAGGCAGAAGCTACAACGAATTCGAGGAGTGGATGATGTCGAGGAAGAATTCCAGGACCTCGTGGTTGCCAGCGACCAATCGAAACTGAT CCAACACCCGTGGAGGAATCTGTTACAAAGGAAGTATAGGCCACATTTGTCCATGGCAATTTTAATTCCCTTCTTCCAACAGCTTACGGGAATCAATGTC ATCATGTTCTACGCACCGGTCTTGTTCAGTAGCATTGGGTTCGGTGACGATGCTGCCTTGATGTCGTCCGTGATTACCGGGATCGTTAATGTCGCGGCCA CGATGGTTTCTATCTACGGTGTCGATAAGTGGGGTCGGAGGTTCCTCTTCTTAGAAGGTGGCACTCAGATGTTCATCTGTCAAGTAGTAGTGGCAGCTTG CATTGGAGCTAAGTTTGGGCTAGATGGGAACCCAGGGGAGCTGCCCAAGTGGTACGCAATCATTGTGGTGCTGTTCATCTGTATCTACGTGGCAGGGTTC GCGTGGTCGTGGGGCCCGCTCGGGTGGTTGGTGCCCAGTGAGATCTTCCCCCTCGAGATCAGGTCGGCCGCTCAGAGTGTAAACGTGTCCGTGAACATGC TCTTCACGTTCATCGTGGCGCAGATTTTCCTGATGACGCTATGTCACTTGAAGTTCGGGCTCTTCCTCTTCTTCGCCTTCTTCGTGGTGATCATGTCGAT TTTCGTCTACTTCTTCCTCCCGGAGACGAAGGGGATCCCCATCGAGGAGATGGGTCAGGTGTGGAGGTCGCATTGGTACTGGTCGAGGTTCGTCGAGACA GAGGATGTCGTGAAGAATAGGAACGTGGAGATGGGGAAATCGGTATGA
AA sequence Show only first row Show all	>Lus10018422 pacid=23162088 polypeptide=Lus10018422 locus=Lus10018422.g ID=Lus10018422.BGIv1.0 annot-version=v1.0 MPAVAIATGGGGKEYPGNLTPFVLVTCIVAAMGGLIFGYDIGISGGVTSMNSFLKKFFPAVYRKKNEEGDNKDMYCQYDSQTLTMFTSSLYLAALLSSIV ASTVTRVFGRKLSMLFGGVLFFGGALINGLAQNVLMIYLGRILLGFGIGFANQSVPLYLSEMAPYRYRGALNIGFQLSITIGILVANVLNYFFSKISWGW RLSLGGAMVPALIITVGSLVLPDTPNSLIERGNHDEARQKLQRIRGVDDVEEEFQDLVVASDQSKLIQHPWRNLLQRKYRPHLSMAILIPFFQQLTGINV IMFYAPVLFSSIGFGDDAALMSSVITGIVNVAATMVSIYGVDKWGRRFLFLEGGTQMFICQVVVAACIGAKFGLDGNPGELPKWYAIIVVLFICIYVAGF AWSWGPLGWLVPSEIFPLEIRSAAQSVNVSVNMLFTFIVAQIFLMTLCHLKFGLFLFFAFFVVIMSIFVYFFLPETKGIPIEEMGQVWRSHWYWSRFVET EDVVKNRNVEMGKSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10018422 [exp]	0	1
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10015015 [exp]	9.9	0.9169
AT3G01640		ATGLCAK	ARABIDOPSIS THALIANA GLUCURONO...		Lus10022282 [exp]	10.1	0.9237
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10011786 [exp]	12.7	0.8956
AT5G66810			unknown protein		Lus10022461 [exp]	17.3	0.8893
AT5G54940			Translation initiation factor ...		Lus10021532 [exp]	22.0	0.8958
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10013959 [exp]	22.1	0.8511
AT2G39950			unknown protein		Lus10028266 [exp]	23.1	0.8998
AT1G10600		AMSH2	associated molecule with the S...		Lus10030613 [exp]	23.8	0.9098
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10019299 [exp]	24.8	0.9092
AT2G38410			ENTH/VHS/GAT family protein (....		Lus10025264 [exp]	29.8	0.9081

Compare expression of checked genes

Lus10018422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.