Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61350 470 / 6e-160 ARM repeat superfamily protein (.1) AT2G05810 155 / 2e-40 ARM repeat superfamily protein (.1.2) AT5G50900 150 / 6e-39 ARM repeat superfamily protein (.1) AT1G01830 149 / 2e-38 ARM repeat superfamily protein (.1.2.3) AT2G45720 148 / 3e-38 ARM repeat superfamily protein (.1.2) AT2G23140 63 / 5e-10 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G58680 56 / 3e-08 ARM repeat superfamily protein (.1) AT3G01400 53 / 3e-07 ARM repeat superfamily protein (.1) AT5G67340 52 / 7e-07 ARM repeat superfamily protein (.1) AT4G16490 49 / 9e-06 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002598 [exp] 974 / 0 AT1G61350 495 / 5e-170 ARM repeat superfamily protein (.1) Lus10041369 [exp] 158 / 2e-41 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036559 [exp] 150 / 2e-38 AT2G45720 699 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034933 [exp] 138 / 2e-38 ND 87 / 6e-21 Lus10035337 [exp] 130 / 7e-33 AT2G05810 382 / 3e-129 ARM repeat superfamily protein (.1.2) Lus10029995 [exp] 128 / 2e-31 AT2G05810 438 / 5e-149 ARM repeat superfamily protein (.1.2) Lus10019308 [exp] 61 / 3e-09 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 60 / 4e-09 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 59 / 7e-09 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033800 [exp] 556 / 0 AT1G61350 629 / 0.0 ARM repeat superfamily protein (.1) Potri.011G042300 [exp] 537 / 0 AT1G61350 622 / 0.0 ARM repeat superfamily protein (.1) Potri.014G076500 [exp] 174 / 2e-47 AT2G45720 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G153700 [exp] 167 / 9e-45 AT2G45720 717 / 0.0 ARM repeat superfamily protein (.1.2) Potri.014G158700 [exp] 145 / 6e-37 AT2G05810 506 / 1e-174 ARM repeat superfamily protein (.1.2) Potri.015G103700 [exp] 140 / 2e-35 AT5G50900 546 / 0.0 ARM repeat superfamily protein (.1) Potri.012G104400 [exp] 134 / 4e-33 AT5G50900 624 / 0.0 ARM repeat superfamily protein (.1) Potri.002G224400 [exp] 130 / 5e-32 AT2G05810 459 / 3e-156 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 60 / 3e-09 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 60 / 3e-09 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018423 pacid=23162187 polypeptide=Lus10018423 locus=Lus10018423.g ID=Lus10018423.BGIv1.0 annot-version=v1.0 ATGGGTCGCCGTCGTCAAAGTGAAACCACAGAGCCAGAGTCTTCTTCCTCTTCTTCTGCTTCTTCATCGTCGCCGTCGTCGGCGGCGGCGAGCTACAGTC CTAGCCAAGCAGTCGACGTCCTCTCGTCGCTAATCTCCTTCTCCCACTCAATCAAGGTCTTCCCAGTCAAATGGCAGGCGATACGACACAAGCTCCACGA GCTCAACTCGTCCCTGCTCGCAATCCTCGCCAACTGCGATTCGGAATCCAACCCAATCCTCTCCGCCGTCCTCGCCGGAATCGCTGCCACCGCCGGCGAC TGCTACGACCTCGCCAAACGCTGCGCCGACTCCTCCTTCAGCGGGAAGCTGCTTATGCAGAGCGATTTGGATGTTCTCGCCTCGAGATTCGACCGTCATT TGGAGAATCTCTCCGGGATCTGCAACTCCGGCGTTTTGACTCACGGATTCGCCATAGTCGTCTCGAGACCGAAGGTCTCGACCTCGACGAAGGAGGATCT CAGATTCTACGTCAGGGATTGCTTTACTAGGATGAAGATTGGAGATTCCGAGATGAAGAAGCAAGCCGTTATAAATCTGAATGAAGCAGTCGACGAGGAT GAGAAATACGTTAGGGTTATCGTCGAATTGGGGGAAATCGTTACAAATTTGGTTAAGCTTCTTGATTCGTCGGATTATGAAATTCAAGAAGAGTCAGCGA AATTGGTGCTGTCAATTTCTGGATTCGATTCCTACAAGCAGGTATTGATCGGCGTCGGAGTGATTGCGCCGCTGGTTAGAGTTCTAGAAGGCGGAAGCGA ATTAGGGAAAGTTATGTCCGCCAGCTGTTTGATGAAATTAACGCAGAATTCCGATAACGCATGGTCTGTCTCTGCTCACGGGGGCGTCACAACGTTACTA AAACTCTGCTCTGAGTCTTCTCCGGCATCGCCAGAGATCATAGCTCCGGCAACATCCGTCTTAAAGAACCTTGCCGCCGTAGAGGAAATAAAGAGGTTCA TGCTCGAAGACGGCGCCGTTTCAACGTTTGTGAAAATGGTTGGATCATCTAACGAAGACGCCGTCCGAGTAATCGCAATCGACTTCCTTCAGTTCATCGC TCCACAAGACGACGCCTTTTCAACAATCCGGGCAATGGTACGGGTCCTAGACCCGACCCAGAACCCGATTTCTTCATCGTCATCGTCAACCACGAGATCT CGAGAGGCAGCGTTAATGGCGATCGAGAGTCTCTGCTTCAACAACTCCCAAAACCGCATCGATCTCCTCTTAACCAGATTCAACTTCGTCGAATTCTTAC TCCACCACCTCCGATCCTCCTCCGAATCCTCTTCCCTGAAAGTGCTCTCCCTGAAAGTCTCCTGCCACCTCGCCGCAGCTTCCGAGGACGCCAAGAGAGC AATGTCTGAAGCCGGATTCACACCGGAGCTCGTCAAATTCCTCGCCGCGAAATCCGCCGACGTCAGGAAAATGGCTGGTGAGGCGATTCTGGCATTGCTT TTGATTCCGAGGAACCGAAAGAGATTTCTGAACGACGAATTGAGCGTCGGATTCGTTCTGGAGCTGATTAACAAGGAGGAGGAGGAGGAGGAGGAGGACA GATCGAGTTCTGATTCGAAGTTCTTAGTGTCGATTTTAATGGCGGTGGTGGCGAATAGTAACAGCTGGAGGAGGAAGATCGCCGGATCGGGATATCTGAA GAGTGTTGAAAAGCTTGCGGAATCTGAAGGTTTGGAAGGGAAGAAGCTTGTGAAGAGACTGGGGAGTGGCAGGATTCGGAGTATGATCAATGGGATTATT CGACATTAG
AA sequence Show only first row Show all	>Lus10018423 pacid=23162187 polypeptide=Lus10018423 locus=Lus10018423.g ID=Lus10018423.BGIv1.0 annot-version=v1.0 MGRRRQSETTEPESSSSSSASSSSPSSAAASYSPSQAVDVLSSLISFSHSIKVFPVKWQAIRHKLHELNSSLLAILANCDSESNPILSAVLAGIAATAGD CYDLAKRCADSSFSGKLLMQSDLDVLASRFDRHLENLSGICNSGVLTHGFAIVVSRPKVSTSTKEDLRFYVRDCFTRMKIGDSEMKKQAVINLNEAVDED EKYVRVIVELGEIVTNLVKLLDSSDYEIQEESAKLVLSISGFDSYKQVLIGVGVIAPLVRVLEGGSELGKVMSASCLMKLTQNSDNAWSVSAHGGVTTLL KLCSESSPASPEIIAPATSVLKNLAAVEEIKRFMLEDGAVSTFVKMVGSSNEDAVRVIAIDFLQFIAPQDDAFSTIRAMVRVLDPTQNPISSSSSSTTRS REAALMAIESLCFNNSQNRIDLLLTRFNFVEFLLHHLRSSSESSSLKVLSLKVSCHLAAASEDAKRAMSEAGFTPELVKFLAAKSADVRKMAGEAILALL LIPRNRKRFLNDELSVGFVLELINKEEEEEEEDRSSSDSKFLVSILMAVVANSNSWRRKIAGSGYLKSVEKLAESEGLEGKKLVKRLGSGRIRSMINGII RH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61350			ARM repeat superfamily protein...		Lus10018423 [exp]	0	1
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	2.6	0.8293
AT2G44500			O-fucosyltransferase family pr...		Lus10003914 [exp]	3.5	0.7804
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	4.9	0.8070
					Lus10018873 [exp]	5.3	0.8045
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Lus10022833 [exp]	6.8	0.8140
AT1G61350			ARM repeat superfamily protein...		Lus10002598 [exp]	9.5	0.8040
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001628 [exp]	13.7	0.7607
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	15.7	0.7735
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Lus10006491 [exp]	16.1	0.7565
AT5G62890			Xanthine/uracil permease famil...		Lus10004228 [exp]	20.6	0.7542

Compare expression of checked genes

Lus10018423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.