Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016866 [exp] 74 / 5e-15 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 46 / 1e-05 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 46 / 2e-05 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10011200 [exp] 45 / 2e-05 AT1G47790 84 / 2e-18 F-box and associated interaction domains-containing protein (.1) Lus10007606 [exp] 45 / 3e-05 AT1G47790 67 / 3e-12 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 44 / 5e-05 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 44 / 5e-05 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 44 / 6e-05 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10038864 [exp] 42 / 6e-05 AT1G47790 50 / 2e-08 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018424 pacid=23162142 polypeptide=Lus10018424 locus=Lus10018424.g ID=Lus10018424.BGIv1.0 annot-version=v1.0 ATGCATGACGTCTGTCAGTTAGTCAGAGCAGTCGGCCAACGACTTGACGACGCAGTTATCGAGGAGTTGGTTGGTTGGGGTTTAAGAGACAGGGGAGGAG GCGCCGATGATTTGAGAGGCAAGGGAGATACAGGGGAGGTCATAAGGTGGAGCAGAGGAAGAACCGAACCACCGATAGGAGGTGGTGGACGGAAGATAGA AGCTCCGGCGGCGGAGGGACCTGTTTCAAAACCATTATCCAACAGAAAAACATCTTTGGAAGAATGGTGGATCGAATCGAAAAAGGAACAAGAAGTTAGG GATTTTAGTTTGTTCATCCAAACCATCCTTATGCATTCAACTTTTCTGGCTGGTTGCGTAAAAACGAAGAATGATCTTGATGATGTTTGGACAAATAAGA AGAGGAAGAAGAGGAACGAGCAGAATAATAAGAAGAGTAAGAAGAGAAGGATGACGATAAAGAACGATCTTAATGATGAGCTTTTCATTACTCAGATGCT CAGAAGACTCGTAGCCAGGTCAAATCGTATTCGTACAAATGAGAAGAGGAAGAAGAGGATCGAGCAGAAGAAGAGGAACCAGCAGGAGAAGAATAAGAAG GGGAATGAGCAGGAGAAGAATAAGAAGAGAATGATAACAAAAAAGAACTATGTTAATGATGATGATTTGGTGATTACTCAGATACTCAGCAAACTCCCAG TCAAGTCACTTATGCGATTCAAGTCCGTCTCTAAATTCTGA
AA sequence Show only first row Show all	>Lus10018424 pacid=23162142 polypeptide=Lus10018424 locus=Lus10018424.g ID=Lus10018424.BGIv1.0 annot-version=v1.0 MHDVCQLVRAVGQRLDDAVIEELVGWGLRDRGGGADDLRGKGDTGEVIRWSRGRTEPPIGGGGRKIEAPAAEGPVSKPLSNRKTSLEEWWIESKKEQEVR DFSLFIQTILMHSTFLAGCVKTKNDLDDVWTNKKRKKRNEQNNKKSKKRRMTIKNDLNDELFITQMLRRLVARSNRIRTNEKRKKRIEQKKRNQQEKNKK GNEQEKNKKRMITKKNYVNDDDLVITQILSKLPVKSLMRFKSVSKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018424 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	3.9	0.8609
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	8.2	0.8607
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10030188 [exp]	14.0	0.7981
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	14.1	0.8324
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	21.0	0.7983
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	21.9	0.7983
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	22.8	0.8309
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	22.8	0.7983
AT3G14470			NB-ARC domain-containing disea...		Lus10032781 [exp]	23.2	0.7816
AT3G44220			Late embryogenesis abundant (L...		Lus10005214 [exp]	23.2	0.7883

Compare expression of checked genes

Lus10018424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.