Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62980 583 / 0 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) AT1G12820 570 / 0 IPS1, AFB3 auxin signaling F-box 3 (.1) AT4G03190 566 / 0 ATGRH1, ATGER1, AFB1, GRH1 AUXIN SIGNALING F BOX PROTEIN 1, GRR1-like protein 1 (.1) AT3G26810 556 / 0 AFB2 auxin signaling F-box 2 (.1) AT5G49980 513 / 1e-176 AFB5 auxin F-box protein 5 (.1) AT4G24390 503 / 1e-172 AFB4 auxin signaling F-box 4, RNI-like superfamily protein (.1.2) AT2G39940 282 / 2e-87 COI1 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) AT4G15475 91 / 8e-19 F-box/RNI-like superfamily protein (.1) AT5G67250 66 / 5e-11 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) AT5G25350 57 / 4e-08 EBF2 EIN3-binding F box protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011262 [exp] 1094 / 0 AT3G62980 588 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10018426 [exp] 930 / 0 AT3G62980 634 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10020086 [exp] 889 / 0 AT3G62980 644 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10006738 [exp] 883 / 0 AT1G12820 647 / 0.0 auxin signaling F-box 3 (.1) Lus10035160 [exp] 604 / 0 AT3G26810 894 / 0.0 auxin signaling F-box 2 (.1) Lus10011260 [exp] 603 / 0 AT3G62980 397 / 2e-134 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Lus10035161 [exp] 513 / 5e-178 AT3G26810 770 / 0.0 auxin signaling F-box 2 (.1) Lus10031991 [exp] 424 / 2e-144 AT3G26810 635 / 0.0 auxin signaling F-box 2 (.1) Lus10011261 [exp] 308 / 8e-103 AT1G12820 241 / 4e-77 auxin signaling F-box 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G033900 [exp] 838 / 0 AT1G12820 654 / 0.0 auxin signaling F-box 3 (.1) Potri.011G042400 [exp] 833 / 0 AT3G62980 649 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.001G323100 [exp] 582 / 0 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.017G061600 [exp] 572 / 0 AT3G26810 902 / 0.0 auxin signaling F-box 2 (.1) Potri.014G134800 [exp] 572 / 0 AT3G62980 947 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.002G207800 [exp] 565 / 0 AT3G62980 937 / 0.0 TRANSPORT INHIBITOR RESPONSE 1, F-box/RNI-like superfamily protein (.1) Potri.005G159300 [exp] 538 / 0 AT5G49980 934 / 0.0 auxin F-box protein 5 (.1) Potri.002G102700 [exp] 533 / 0 AT5G49980 911 / 0.0 auxin F-box protein 5 (.1) Potri.008G064400 [exp] 279 / 6e-86 AT2G39940 794 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1) Potri.010G192900 [exp] 278 / 7e-86 AT2G39940 790 / 0.0 CORONATINE INSENSITIVE 1, RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018425 pacid=23162161 polypeptide=Lus10018425 locus=Lus10018425.g ID=Lus10018425.BGIv1.0 annot-version=v1.0 ATGGATCGGAGCTGGAAGAGCGATAAGGTCCTCGAGCTAGTCCTCTCGACACTGACATGCCACAAGGACCGGAGCTCGGCCTCACTAGTCTGCAAGGACT GGTACGATGCGGAAAGATGGTCCCGGACTCACATTTTCATCGGGAACTGCTACTCCGTCTCTCCGGAAATCGTCGCCCGACGGTTCCCGAAAATCCGGAG CGTGACCCTAAAGGGGAAGCCAAGGTTCTCGGATTTCGGCCTGGTCCCAGAGGACTGGGGCGCCAATGTCCAACCCTGGCTTTTTATGTTCGCTTCGGAG TATCCATTTCTCGAGGAGCTAAGGCTGAAGAGGATGCGAGTTAGTGATGAGAGCTTGGAGTTCTTGGCGCTTAATTTTCCCGATTTCAAAGCTCTGTCTC TTTTGAGCTGTGATGGATTTAGTACTGACGGACTTGCCGCCATTACCGCTAATTGCAAGAACCTAACCGAATTGGACATACAAGAGAACGGGATAGAGGA AACTGGTTCAGATTGGTTGAGTTGCTTCCCTGACGACTTCAACTCACTGGAAGTGCTCAATTTCTCCACCCTAAACACCGAAGTGGATCCCGAAGTTCTT GAAAACCTCATAAGCCGATGCAAATCATTTAAGGTTCTCAAGGTCGATCGAACCGTTCCCTTGGACTGTCTCCAGAGGTTGCTTCTTCACGTTGGTCCTC AGCTGACCGAGCTCGGTGCTGGCTCTTTCTCGCAAGAGCTGACACCTGGTGAGTACGCGGAGCTCGAGGAAGCTTTCGGACTTTGCAAGAATCTGAATGT GCTCTCTGGTTTGTGGGATGCTACTGCTTCGAATCTACGAGCTATCTACAAGGCCTGCAGTAGGGTGACTTTCCTTAACTTGAGCTACTCTGCTTTGCAA TGTCAAGAGCTTGCTGATCTGCTTCCTCATTGCCCCTCTCTTCGCCGCCTCTGGGTCCTGGACACAGTCGGAGATGAAGGCCTGGAAGCGGTCGGATCGA ACTGCCCGTCCCTCGAAGAGCTGCGAGTCTTCCCCGCCGATCCTTTCGAGGACGAAACCCCTCACGGTGTGACAGAATCAGGCATCATCCCCATCTCTAA ACACTGCCACAACCTCAACTACATACTCTACTTCTGCACCCAAATGACCAACGCCACAATCGCCACACTAGTCCACAACAACCCTCACTTCACCCACTTC CGTCTCTGCATCATGACACCTTCCCTACCCGACCCGGAAACCAACGAACCGATGGATGAAGCCTTCGGTTCGGTCGCCAAAACCTGTAAGAACCTGCAAC GCCTCTCTGTTTCTGGGCTCCTAACCGATCTTGCATTCGAGTATATTGGCCGGTACGCCAAAAACTTGGAGACTTTGTCAGTGGCTTTTGCGGGGAGTAG CGATAACGGGATGAAGTACGTCCTCGAGGGGTGTCCGAAGCTGAGGAAGCTCGAGATTCGAGATTCTCCATTCGGAGATGCTGCGTTGATTTCGGGTTTG GAGAGGTACAAGTCGATGAGGTCATTGTGGATGTCGGGGTGTAACGTTACTATGAAGGGATGCAGTGATTTGGCTAAGGAGATGCCGAGGCTTAACGTTG AAGTGGTGATGCAGGAGGAGGAAGGAGGAGTTGGTGATGAGTGTGGTGCGGATAAGGTTTATGTTTATCGATCGGTCGCTGGGCCACGAGGGGATGCTCC GCCTTCTGTGGTCACCGTCTTGAGTCAATGA
AA sequence Show only first row Show all	>Lus10018425 pacid=23162161 polypeptide=Lus10018425 locus=Lus10018425.g ID=Lus10018425.BGIv1.0 annot-version=v1.0 MDRSWKSDKVLELVLSTLTCHKDRSSASLVCKDWYDAERWSRTHIFIGNCYSVSPEIVARRFPKIRSVTLKGKPRFSDFGLVPEDWGANVQPWLFMFASE YPFLEELRLKRMRVSDESLEFLALNFPDFKALSLLSCDGFSTDGLAAITANCKNLTELDIQENGIEETGSDWLSCFPDDFNSLEVLNFSTLNTEVDPEVL ENLISRCKSFKVLKVDRTVPLDCLQRLLLHVGPQLTELGAGSFSQELTPGEYAELEEAFGLCKNLNVLSGLWDATASNLRAIYKACSRVTFLNLSYSALQ CQELADLLPHCPSLRRLWVLDTVGDEGLEAVGSNCPSLEELRVFPADPFEDETPHGVTESGIIPISKHCHNLNYILYFCTQMTNATIATLVHNNPHFTHF RLCIMTPSLPDPETNEPMDEAFGSVAKTCKNLQRLSVSGLLTDLAFEYIGRYAKNLETLSVAFAGSSDNGMKYVLEGCPKLRKLEIRDSPFGDAALISGL ERYKSMRSLWMSGCNVTMKGCSDLAKEMPRLNVEVVMQEEEGGVGDECGADKVYVYRSVAGPRGDAPPSVVTVLSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018425 [exp]	0	1
AT4G36750			Quinone reductase family prote...		Lus10014325 [exp]	1.0	0.8381
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	2.2	0.7749
AT3G55420			unknown protein		Lus10023413 [exp]	12.7	0.7525
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040745 [exp]	14.0	0.7946
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	15.2	0.7147
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	16.2	0.7381
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10043168 [exp]	17.0	0.7981
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Lus10035422 [exp]	21.5	0.7846
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	22.3	0.7458
AT1G22790			unknown protein		Lus10028733 [exp]	22.4	0.6897

Compare expression of checked genes

Lus10018425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.