Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22080 419 / 1e-144 RHS14 root hair specific 14 (.1) AT4G22090 417 / 1e-143 Pectin lyase-like superfamily protein (.1) AT1G11920 416 / 1e-143 Pectin lyase-like superfamily protein (.1) AT1G67750 338 / 1e-112 Pectate lyase family protein (.1) AT3G07010 336 / 8e-112 Pectin lyase-like superfamily protein (.1) AT1G30350 331 / 1e-110 Pectin lyase-like superfamily protein (.1) AT1G04680 330 / 3e-109 Pectin lyase-like superfamily protein (.1) AT3G24670 327 / 5e-108 Pectin lyase-like superfamily protein (.1) AT5G63180 325 / 2e-107 Pectin lyase-like superfamily protein (.1) AT4G13710 323 / 7e-106 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011258 [exp] 572 / 0 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011257 [exp] 496 / 7e-175 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018430 [exp] 496 / 1e-174 AT1G11920 525 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 332 / 6e-110 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 332 / 1e-109 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011885 [exp] 332 / 1e-109 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10036946 [exp] 330 / 2e-109 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 323 / 8e-107 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 323 / 1e-106 AT1G67750 623 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008000 [exp] 430 / 7e-149 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.011G008100 [exp] 402 / 4e-138 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.004G007300 [exp] 396 / 1e-135 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.015G087800 [exp] 326 / 7e-108 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 325 / 2e-107 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 325 / 8e-107 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 324 / 1e-106 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G052300 [exp] 323 / 4e-106 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 322 / 5e-106 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 313 / 3e-103 AT1G67750 671 / 0.0 Pectate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10018429 pacid=23162204 polypeptide=Lus10018429 locus=Lus10018429.g ID=Lus10018429.BGIv1.0 annot-version=v1.0 ATGGGATTGTTCTCCATCGTGCTCTTGACGGTGTCGTTTCGTCTTCTACTAACTCACGATCTACACGCCAATGTTGTTGCCTCACTAGACTACTATAGCT ACAAGCCTGGTTCTTTGGCAGATTGTATGGTGGGTTTAGGGCAGACCACTATAGGGGGAAAGTATGGTTCGATCTACGTTGTGAAAACGGGAGGTGATGA TGACCCTGCAGACCCCAAACCAGGAACCTTTCGATACGGAGCCTTCCAGGCGAAATCGTTATGGATCGTGTTTGCAAAAGACATGGTGATCACTCTGAAG AAGGAGTTGGTGGTGAACAGCTACAAAACCATAGAGGGGAGAGGCGCCAAACTGGATATTGCCTATGGGCAGTGCATCACGATCCAGGACGTGACACATG TTATAGTGCATGGGATTAGCATCCACCACTGCGAGCCCGTAACGCCCGGGCTTGTCAGGAATAGCCCTAGTCATGTTGGTAGGCGACTCGGCTCGGATGG GGACGCCATTGCCATATTTGCATCCTCGAACGTGTGGATCGACCATTGCTACCTGGCTCGGTGTGCTGACGGGCTCATCGACATCATCCATGCTTCTACT TCCATCACCATCTCTAACAACTATTTCACACAACATGATAAGGTTATGCTAATTGGACACAATGACAATAACAAGGAAGACAAAGTTATGAAGATAACCA TTGCATTCAACCATTTTGGAGTTGGTTGTATTGAAAGAATGCCAAGGGTGAGGTTTGGGTATGCACATGTTGTGAACAATAGATACGACGAGTGGCATAT GTATGCAATTGGAGGCAGTGCTAATCCCACCATATTCAGCCAGGGAAATTATTTCATTGCCCCCAATAAACCATCTCCCAAACAGATAAACGTGCTCAAC TTTGATCAGGTAACGAAGAGGGAGGTAAAGAGTGGATGGAAGCAGTGGAAGTGGAGGTGGTCGGGGAATGTTTTCGAGAACGGTGCCTACTTTATCGACC AACTATATCTCGAATTTGATTATATGGCGTTCTCGAATCCGGGTTCCGCCATTGAGTGTGAGGGTGCATGGTCTACCAATTTGACAACGATGAATCGAGC ACCAAAAGTCGAGAGCAACGTGCATTATGAGTTGGTTAGGTCTTCATCAAACATGTATTCAGCCTGGCAGAACGAGCTACACGGTCGGCTCGGGCATTAC AAGAGCGGGGTGGAAGGAGATCGAGATATGGAGATTGGCCTTAATCAAGGTAGAAATGCAGCCAAGGTAGTCATAGCATTCCCAACGCCACGGGTGGAAA GGACCGTAAATTGCGAAAGCCAGGGCCTGGCAATCGGTAAAGATATGGGATGCCAATGGAGGCGTAGGAAGTGGCTTCCAGCATGGCGTGGGCTTCAGAG ATAA
AA sequence Show only first row Show all	>Lus10018429 pacid=23162204 polypeptide=Lus10018429 locus=Lus10018429.g ID=Lus10018429.BGIv1.0 annot-version=v1.0 MGLFSIVLLTVSFRLLLTHDLHANVVASLDYYSYKPGSLADCMVGLGQTTIGGKYGSIYVVKTGGDDDPADPKPGTFRYGAFQAKSLWIVFAKDMVITLK KELVVNSYKTIEGRGAKLDIAYGQCITIQDVTHVIVHGISIHHCEPVTPGLVRNSPSHVGRRLGSDGDAIAIFASSNVWIDHCYLARCADGLIDIIHAST SITISNNYFTQHDKVMLIGHNDNNKEDKVMKITIAFNHFGVGCIERMPRVRFGYAHVVNNRYDEWHMYAIGGSANPTIFSQGNYFIAPNKPSPKQINVLN FDQVTKREVKSGWKQWKWRWSGNVFENGAYFIDQLYLEFDYMAFSNPGSAIECEGAWSTNLTTMNRAPKVESNVHYELVRSSSNMYSAWQNELHGRLGHY KSGVEGDRDMEIGLNQGRNAAKVVIAFPTPRVERTVNCESQGLAIGKDMGCQWRRRKWLPAWRGLQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11920			Pectin lyase-like superfamily ...		Lus10018429 [exp]	0	1
					Lus10009729 [exp]	1.4	0.8700
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	3.7	0.8842
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	8.3	0.8619
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	8.5	0.8542
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	9.5	0.8542
					Lus10000380 [exp]	10.4	0.8542
					Lus10010383 [exp]	11.2	0.8542
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10020706 [exp]	11.8	0.7135
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	12.0	0.8531
					Lus10009632 [exp]	12.7	0.8507

Compare expression of checked genes

Lus10018429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.