Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11920 498 / 6e-177 Pectin lyase-like superfamily protein (.1) AT4G22080 496 / 7e-176 RHS14 root hair specific 14 (.1) AT4G22090 489 / 3e-173 Pectin lyase-like superfamily protein (.1) AT1G30350 404 / 3e-140 Pectin lyase-like superfamily protein (.1) AT3G07010 398 / 5e-137 Pectin lyase-like superfamily protein (.1) AT5G48900 397 / 2e-136 Pectin lyase-like superfamily protein (.1) AT3G24230 395 / 2e-135 Pectate lyase family protein (.1) AT3G27400 390 / 9e-134 Pectin lyase-like superfamily protein (.1) AT5G63180 390 / 1e-133 Pectin lyase-like superfamily protein (.1) AT4G13710 390 / 3e-133 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011257 [exp] 745 / 0 AT1G11920 530 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011258 [exp] 634 / 0 AT1G11920 549 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10018429 [exp] 473 / 1e-165 AT1G11920 437 / 8e-152 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 397 / 1e-136 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 398 / 2e-136 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 397 / 2e-136 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 396 / 2e-136 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 386 / 8e-132 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10033037 [exp] 382 / 2e-130 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G008000 [exp] 531 / 0 AT4G22080 540 / 0.0 root hair specific 14 (.1) Potri.004G007300 [exp] 510 / 0 AT4G22080 489 / 1e-173 root hair specific 14 (.1) Potri.011G008100 [exp] 493 / 8e-175 AT4G22080 504 / 2e-179 root hair specific 14 (.1) Potri.001G339500 [exp] 388 / 4e-133 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 387 / 4e-132 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.008G182200 [exp] 385 / 6e-132 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.002G238800 [exp] 385 / 1e-131 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 382 / 2e-130 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 379 / 6e-130 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 381 / 7e-130 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10018430 pacid=23162215 polypeptide=Lus10018430 locus=Lus10018430.g ID=Lus10018430.BGIv1.0 annot-version=v1.0 ATGGGATTCTCATCATCAATCTTCCTCTTAACAATATCATTTCATCTTCTACTAACCCACGATCCGACCACCAATGTTGTCGGGGCTTTTGCGCTCGACT ACTACAACTACAAACCCCGTCTGAAAGGCCATTCCAATCATCGTCTTTATGCAGACGCGACCTCTAAATTGTTGCTGAACCCGATCGACTCCTGCTGGCG TAGGAGTCGAAGTTGGGCGACAGAGAGACGCTCTTTGGCGAACTGCACTGTAGGGTTTGGGGAGGCCACAGAGGGAGGAAAGAACGGTTCGATCTATGTT GTGAAGACCGGCGGGGATGAAGACCCTGCAAACCCCAAGCCGGGAACCCTCCGATACGGAGCCATCCAGACGAAACCGCTATGGATCGTGTTCGAGAAGG ACATGGTGATCACGCTGAAGAACGAGCTGATGGTCAACAGCTACAAGACGATTGACGGGAGGGGCGCCAGGGTGGAGATCGCCTACGGACCGTGCATAAC GATCCAGGGTGTGAGCCATGTTATCGTGCATGGGATCAGCATCCACCACTGCAAGCCCGGGAAGCCCGGGCCTGTCAGGATCAGCCCGAGCCATGTTGGT AGAAGACTAGGCTCGGACGGGGATGCCATTGCTATATTTGGATCCTCGAACGTGTGGATCGACCATTGCTACTTGGCTCGGAGTGCGGACGGGCTCATCG ACATCATCCATGCTTCTACTTACATCACAATCTCTAACAACTATTTCACCCAACATGATAAGGTGATGTTGATTGGACACAATGACACTTACAAAGAAGA CAAAGTGATGAAGATAACCATTGCATTTAACCATTTTGGAGTCGGTTGTATTGAAAGAATGCCCAGGGTCAGATTTGGGTATGCACATGTTGTGAATAAT AGGTATGATGAGTGGCAAATGTATGCAATTGGAGGCAGTGCTAATCCCACCATATTGAGCGAGGGAAATTACTTCATTGCCCCCGATAATCCGTCCGCCA AACAGGTGACAAAGAGGCAGGCCAGGGGTGGATGGAAGCAGTGGAAGTGGAGGTCGTCGGGGGATGTTTTCGAGAATGGTGCCTACTTCGTAGAGTCAGG ACGCGGACAATGTATTCCCCCGTACACTCGCTCGCAATCCTTTAAGGTTGCAGACGGTGCTATGACTCCGGCTCTGACCTATGCCGCGGGCCCACTCTCT TGCTCTTGGGGGAAACCCTGCTGA
AA sequence Show only first row Show all	>Lus10018430 pacid=23162215 polypeptide=Lus10018430 locus=Lus10018430.g ID=Lus10018430.BGIv1.0 annot-version=v1.0 MGFSSSIFLLTISFHLLLTHDPTTNVVGAFALDYYNYKPRLKGHSNHRLYADATSKLLLNPIDSCWRRSRSWATERRSLANCTVGFGEATEGGKNGSIYV VKTGGDEDPANPKPGTLRYGAIQTKPLWIVFEKDMVITLKNELMVNSYKTIDGRGARVEIAYGPCITIQGVSHVIVHGISIHHCKPGKPGPVRISPSHVG RRLGSDGDAIAIFGSSNVWIDHCYLARSADGLIDIIHASTYITISNNYFTQHDKVMLIGHNDTYKEDKVMKITIAFNHFGVGCIERMPRVRFGYAHVVNN RYDEWQMYAIGGSANPTILSEGNYFIAPDNPSAKQVTKRQARGGWKQWKWRSSGDVFENGAYFVESGRGQCIPPYTRSQSFKVADGAMTPALTYAAGPLS CSWGKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11920			Pectin lyase-like superfamily ...		Lus10018430 [exp]	0	1
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10003754 [exp]	3.5	0.8072
AT5G05390		LAC12	laccase 12 (.1)		Lus10009841 [exp]	7.1	0.8226
AT1G68630			PLAC8 family protein (.1)		Lus10008890 [exp]	12.1	0.7661
AT5G44550			Uncharacterised protein family...		Lus10000781 [exp]	12.5	0.8327
AT2G48140		EDA4	embryo sac development arrest ...		Lus10022067 [exp]	13.6	0.7990
AT5G49350			Glycine-rich protein family (....		Lus10041125 [exp]	13.7	0.7950
AT5G23750			Remorin family protein (.1.2)		Lus10008014 [exp]	16.2	0.7246
AT4G15417		ATRTL1	RNAse II-like 1 (.1)		Lus10015141 [exp]	16.3	0.7746
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10042334 [exp]	16.4	0.7852
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10022471 [exp]	30.3	0.8069

Compare expression of checked genes

Lus10018430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.