Plant FIBer expression Database

Lus10018431 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G21500 51 / 1e-07 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011256
[exp]
251 / 2e-84 AT4G21500 69 / 8e-14 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G034200
[exp]
84 / 3e-19 AT4G21500 80 / 7e-18 unknown protein
Potri.011G042600
[exp]
76 / 3e-16 AT4G21500 77 / 1e-16 unknown protein
PFAM info
Representative CDS sequence
>Lus10018431 pacid=23162127 polypeptide=Lus10018431 locus=Lus10018431.g ID=Lus10018431.BGIv1.0 annot-version=v1.0
ATGAAGCAAAATGAGATGATGAATCCATGGGGAATATCTTTGAAAACCATTTTACTCTTCTTCATAATGCCATCATCAACTTCTTCTTGTTCCTCCGACC
CTCTCTTCTCCTTCGTCGCAGCTCTCTACGCTCTGATCCTACTATACTTCCCCGGCGGCGCTCTCTGTTTCTCTCCGGCAGTGATACTCATCGCCGCGAT
CGCCTTACTCTGCCTCCTCCGCCTCGGCGCCCTCCAAACCAAGCCCACCATCACAACCGCCGGGCCCACAATCATTGAAGCCCACAAGCCCAAAGACGGT
ACCATAAAGTCCGACTCCCTGACCCGATCGCCGGATTCCGACCCGGATAGCTTCTCCTCCTTCGTCCACTGGGACGTCGGAGCTCCGTTGGAGGTTATCT
ACGAGGAAGGGGAAGATCATTTCCCTCAATTCGATTTGGATGATCGAAATGAGGAAGGAATTATTCGGAGGTACCCGTCGCTGTCGATGTATTATCCGGA
GTCCGACGGATCAGATTCGTCCTCGGACGACGGCGGCGAATTCTGCGGCGGTGGATTCCGGTGGGATGAGGAGGACGGAGAAGGGATGTTGATCGAGATT
GATTTGGATCATCGTAAGAGTAAGGGTTTTGATCGTTTTGGGTTTTGCGGCGAGGAAGAGAATATGATTGAGATTGATATCTCGCCGGGGAAGCTCGACG
CCGTGTTCTCCGGCGAAGTGTGTGATTATTGA
AA sequence
>Lus10018431 pacid=23162127 polypeptide=Lus10018431 locus=Lus10018431.g ID=Lus10018431.BGIv1.0 annot-version=v1.0
MKQNEMMNPWGISLKTILLFFIMPSSTSSCSSDPLFSFVAALYALILLYFPGGALCFSPAVILIAAIALLCLLRLGALQTKPTITTAGPTIIEAHKPKDG
TIKSDSLTRSPDSDPDSFSSFVHWDVGAPLEVIYEEGEDHFPQFDLDDRNEEGIIRRYPSLSMYYPESDGSDSSSDDGGEFCGGGFRWDEEDGEGMLIEI
DLDHRKSKGFDRFGFCGEEENMIEIDISPGKLDAVFSGEVCDY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G21500 unknown protein Lus10018431
[exp]
0 1
AT4G21500 unknown protein Lus10011256
[exp]
3.9 0.8396
AT1G30260 AGL79 unknown protein Lus10023289
[exp]
6.9 0.8064
AT2G01940 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOP... Lus10042288
[exp]
9.5 0.8013
AT5G02750 SGR9 SHOOT GRAVITROPISM 9, RING/U-b... Lus10015046
[exp]
11.0 0.7958
AT5G24090 ATCHIA chitinase A (.1) Lus10010137
[exp]
23.0 0.7899
AT4G27590 Heavy metal transport/detoxifi... Lus10032924
[exp]
23.4 0.7510
AT3G55370 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) Lus10040305
[exp]
24.8 0.7501
AT1G52190 Major facilitator superfamily ... Lus10025802
[exp]
25.4 0.7999
AT3G12410 Polynucleotidyl transferase, r... Lus10039591
[exp]
26.8 0.7485
AT1G52190 Major facilitator superfamily ... Lus10035860
[exp]
32.2 0.7725

Lus10018431 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.