Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21510 97 / 3e-25 F-box family protein (.1) AT1G61340 85 / 9e-21 F-box family protein (.1.2) AT4G05010 63 / 1e-12 F-box family protein (.1) AT4G35930 56 / 1e-09 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011255 [exp] 320 / 3e-113 AT4G21510 114 / 1e-31 F-box family protein (.1) Lus10022370 [exp] 80 / 2e-19 AT4G21510 67 / 1e-14 F-box family protein (.1) Lus10028422 [exp] 55 / 4e-09 AT4G35930 267 / 3e-89 F-box family protein (.1) Lus10041876 [exp] 54 / 7e-09 AT4G35930 265 / 3e-88 F-box family protein (.1) Lus10025956 [exp] 54 / 1e-08 AT4G35930 301 / 2e-102 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034400 [exp] 133 / 2e-39 AT1G61340 127 / 2e-37 F-box family protein (.1.2) Potri.011G042800 [exp] 129 / 4e-38 AT4G21510 115 / 4e-32 F-box family protein (.1) Potri.005G110200 [exp] 57 / 8e-10 AT4G35930 332 / 4e-114 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018432 pacid=23162203 polypeptide=Lus10018432 locus=Lus10018432.g ID=Lus10018432.BGIv1.0 annot-version=v1.0 ATGGCGTTGGGAAGGAGTTGCAGCAGCTCAATGGTGGAGGACGAGCAAGTCCCGTTTGAGTTGGTGAGGTACAGTTCTTTCGGAAGGAAGAGGATCACCG TCTCCCCGAGTCTCGAATCTTGGGATATGGAGACTGGTCCTGTAACTCCGCTGAAGAGGCATTGCAGTGGAGCAACAATGGCTGCTGCTTTCGCAGCAGA GCTCGAACGCTTGCCCCAAGAGCTTCTGGTTAAAGTAATCTGTGGAGTGAATCATGAAGATCTGAAGCAGCTTCTCCTCGTCTCGAAACCAATCTCCGAA GCTACTTCGATTGCTAGAGAAATCCACTTTGCATACGGCACCCCGAAGAAATTCCGAGCCTTTCGATCTCCGGTAGTCGATTTCTCCACTCTGGAAATCA ACGAGATCGAAACGCCTCGAGCTCCCAGGGCGGTGAGGGAGTACAAGCTGTTGAGCAAGAAGGTGGCTTCGGACCTGTCGGTTTCTCTCTTCTCTTCGCC TGAGCCGAAGAGGAGAGGATCTCTGTTCACCGACATGGAGATCGACGACGACATATGA
AA sequence Show only first row Show all	>Lus10018432 pacid=23162203 polypeptide=Lus10018432 locus=Lus10018432.g ID=Lus10018432.BGIv1.0 annot-version=v1.0 MALGRSCSSSMVEDEQVPFELVRYSSFGRKRITVSPSLESWDMETGPVTPLKRHCSGATMAAAFAAELERLPQELLVKVICGVNHEDLKQLLLVSKPISE ATSIAREIHFAYGTPKKFRAFRSPVVDFSTLEINEIETPRAPRAVREYKLLSKKVASDLSVSLFSSPEPKRRGSLFTDMEIDDDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21510			F-box family protein (.1)		Lus10018432 [exp]	0	1
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10020069 [exp]	6.0	0.8848
AT4G21920			unknown protein		Lus10001143 [exp]	11.4	0.9081
AT5G38760			Late embryogenesis abundant pr...		Lus10003046 [exp]	12.8	0.9012
AT4G16850			unknown protein		Lus10015507 [exp]	13.3	0.9009
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10007964 [exp]	22.2	0.8475
AT4G15940			Fumarylacetoacetate (FAA) hydr...		Lus10006496 [exp]	22.6	0.8827
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10042014 [exp]	26.9	0.8792
AT3G07350			Protein of unknown function (D...		Lus10002335 [exp]	27.5	0.8712
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10002356 [exp]	33.6	0.8706
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10003055 [exp]	34.2	0.8485

Compare expression of checked genes

Lus10018432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.