Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61330 109 / 1e-25 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) AT1G61320 106 / 2e-24 FBD / Leucine Rich Repeat domains containing protein (.1) AT5G56370 47 / 2e-05 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G78740 45 / 5e-05 RNI-like superfamily protein (.1) AT4G00160 44 / 0.0002 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034733 [exp] 472 / 5e-162 AT1G61320 110 / 5e-26 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10010664 [exp] 457 / 1e-156 AT1G61320 125 / 6e-31 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10011971 [exp] 442 / 3e-149 AT1G61320 103 / 2e-23 FBD / Leucine Rich Repeat domains containing protein (.1) Lus10011254 [exp] 416 / 5e-140 AT1G61330 84 / 6e-17 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10029682 [exp] 159 / 7e-47 ND / Lus10042721 [exp] 166 / 7e-44 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10006726 [exp] 130 / 9e-35 AT1G61330 66 / 1e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10028334 [exp] 112 / 9e-30 ND / Lus10034814 [exp] 71 / 7e-15 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G042900 [exp] 173 / 1e-47 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.004G034500 [exp] 164 / 3e-44 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G024200 [exp] 44 / 0.0003 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018433 pacid=23162104 polypeptide=Lus10018433 locus=Lus10018433.g ID=Lus10018433.BGIv1.0 annot-version=v1.0 ATGGCAAACAATGTTGAATTTAACGGATCCATCACTGGTCCTGTTGAAACAGCAGATGTTAGCTCGATGCAATTAGCTCCTAAACGCAATCGAAGTGAAG CATCTAGTTCCGCAACTAAGCATGAATGGAATAACTTCATGTTATTGTCGAACGATATACTTCAAGAGATCTGGGGCTTTCTCGAAGTCAGACAACTAGT CCAATTGGGCACCGTAGCCAAACAATTCAGGAATTGTTTGAAATATGGACAAAAGTTGGACTTTAACTTGCTCTTTCAGAGAGCATTAATGGATGCTGAT CAGTATCAAATGATTGTTGGCCGAATCATGGACCAACATGATGGATCCAAGATCCGGTCACTAAAGTTGTGTTATGCCCCGCTCAATAATTCGGACAATC AAGCTATGGTGGCCCACTGGATAAACAAGGCGTCCCAAAAGGGCGTTGAAGAGCTGGAGCTTAACTTTGACCATGGCTTGGAGCCATTCAGAGTGACACC TGACCTCATATTTGAGATCAAGACACTTGAGACTCTCCGTCTAGTGTACATCGATGTAGGGTCACCAAACAACGAATTCCTGATCACCGGGCTTAGATTT CTCAAGATCTGCTCGATGAAAAAGGTAAATATCGAAGGGGCCCTGCTCGATGGACTTCTAAAAAGCTGCACTGAACTCGAGACGCTCGAGATAATCAAGT GCGGCACTCCCCTCTACATCAAATTTTCAGCTGGAAGTTTGCACAAGTTTAAAAAGTTAAGACTCGCCAGTTGCATGGATCTCCGGGAGATCACCCTCAA CGCGCCCTCCCTCATCACCCTGCATTATTCCGGCCAACCCATTGACTTTAACACCGAAAACTGCGGGAATTTCATCGATTTCTTGATCGACTTTGCGTCC ACAAGATGGACGCATTTACATATTAACCATTTGCAAATTGAGAAGCTAATGGTGGTCATCCTGAGAATCGAAATCTTGACCACCACTAATGTGTTCTTAG AGAGACTGTGCGCGAAACTTGTGGGTGCGGAAGTAGGGAATTTGTTCTGCTATTTCCCAATGGCGAAAGAAATCAACTTGACCCTGAAAGGATCAAGGCA CTGCAATCTGTTCACCCTTGCCTATTTCTTCAGCAAATTTCCTTGCTGTGAGAGGCTTTTTATTAATGTCCGCCGCTGGCTTCAGGTAAGGGCAGTTTTG TTTGGTCGATCTTTTAAAAAAAATCGACTCGGCGAAATCGGTTGGTTTGACAATTTGTATTTTTGTTTGCAAGGACATGCAACTCACACCGTTGCAACTT TATGTGAGACAAGTATTTACGAGAGCAAGCAGTGTTGTGGACCAAGCCGTCGAGCAGGAGGAGCAGCTACCACCGCCGTTACAAATGACCGAAGCGCTCC TCGCCCTAGCCAATCGGGCGCTAGATGCGAGCTACCTGCATTTGGAGCAGCTGAAACTTACCGGTTTCAGGTTCGCACCAGACGAGATGGAGCTGCTATG CTACTTCCTTCGGACCGCGCCCAATTTAAAGACGGTGGCAATCTTTACAGCCTCGCCACGCCACTGGTTGGTGCAGAATGTGCCCGAGGAGCCAACGTTC AACCACATTCTACGACAAGAGCGGATAATCGCTTCTCCCGATTTGCAAATTAG
AA sequence Show only first row Show all	>Lus10018433 pacid=23162104 polypeptide=Lus10018433 locus=Lus10018433.g ID=Lus10018433.BGIv1.0 annot-version=v1.0 MANNVEFNGSITGPVETADVSSMQLAPKRNRSEASSSATKHEWNNFMLLSNDILQEIWGFLEVRQLVQLGTVAKQFRNCLKYGQKLDFNLLFQRALMDAD QYQMIVGRIMDQHDGSKIRSLKLCYAPLNNSDNQAMVAHWINKASQKGVEELELNFDHGLEPFRVTPDLIFEIKTLETLRLVYIDVGSPNNEFLITGLRF LKICSMKKVNIEGALLDGLLKSCTELETLEIIKCGTPLYIKFSAGSLHKFKKLRLASCMDLREITLNAPSLITLHYSGQPIDFNTENCGNFIDFLIDFAS TRWTHLHINHLQIEKLMVVILRIEILTTTNVFLERLCAKLVGAEVGNLFCYFPMAKEINLTLKGSRHCNLFTLAYFFSKFPCCERLFINVRRWLQVRAVL FGRSFKKNRLGEIGWFDNLYFCLQGHATHTVATLCETSIYESKQCCGPSRRAGGAATTAVTNDRSAPRPSQSGARCELPAFGAAETYRFQVRTRRDGAAM LLPSDRAQFKDGGNLYSLATPLVGAECARGANVQPHSTTRADNRFSRFAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	0	1
AT1G51990			O-methyltransferase family pro...		Lus10005268 [exp]	3.5	0.8802
AT1G31550			GDSL-like Lipase/Acylhydrolase...		Lus10026550 [exp]	3.7	0.9269
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10029070 [exp]	4.8	0.7497
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10012032 [exp]	5.1	0.9197
					Lus10010526 [exp]	6.2	0.8800
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036868 [exp]	6.5	0.9114
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10015093 [exp]	6.7	0.8600
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	7.5	0.8995
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10002424 [exp]	8.4	0.8995
					Lus10022511 [exp]	9.2	0.8995

Compare expression of checked genes

Lus10018433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.