Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21520 356 / 7e-121 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011253 [exp] 593 / 0 AT4G21520 596 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016865 [exp] 115 / 4e-31 AT4G21520 95 / 7e-24 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002602 [exp] 110 / 4e-28 AT4G21520 59 / 8e-28 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002600 [exp] 44 / 0.0001 AT3G14770 62 / 1e-10 Nodulin MtN3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043000 [exp] 370 / 4e-126 AT4G21520 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G034600 [exp] 255 / 9e-84 AT4G21520 334 / 2e-114 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10018434 pacid=23162164 polypeptide=Lus10018434 locus=Lus10018434.g ID=Lus10018434.BGIv1.0 annot-version=v1.0 ATGGGAGACGAAAGCGCCGCCCAAGTAGACTCCACCGATGACGTAGCTACCGGACAGTTCACGGACATAGAAGCCAATTCATCGGTTCTCGGAGAAACCC CGCTCATCGGAGCTGCCGACGATCAGAGCTACTCTTACTGGCCTTCGGTTCAGTTCGACGTAGCTCCGCATAGAACGTACCATTTCTCTCAACAGTTCAG AGGCTCCACCGTCTCGAACAACTTCCTCAAAGGCGTCAAATGGTCGCCGGATGGCTCCTGCTTCCTTTCAAGCTCGGAGGACAACAAGCTGCGGCTGTTT TCCCTACCAGATTATTATGATGGATGTGATGCATCTGCCTATGCTGCAGCTCCTTGTACAGATTCTTATGGTGCAAGCATGGTTGTGGATGAAGGGGAGC CTGTTTATGATTTCTGTTGGTATCCCTATATGGCCTCTTCAGACCCGGTCAGCTGTGTGTTCGCTACTACTACTCGTGACCATCCAATTCATCTATGGGA TGCTACTTCTGGATCGCTCCGCTGTACATACCGTGCCTATGATGCTGTGGATGAGATCACTGCTGCCATTTCAGATGCTTTTAATCCTGCTGGGACCAGG ATATATGTTGGATATAACAAGTGTATCAGGGGTTTTAATGTGCATCGTCCCGGTAGAGATTTTGTACAACATTCAATGCTTAAAGGCAACAAGGACGGAC AAACAGGAGTAATATCTTCCATTGCCTTTTCTCCAACTCATGGAGGGATGCTAGCCACCGGTTCATTCAGTCGGTCAACTGCTATATATAGAGAAGACAA CATGGAACTCTTGTATCTCCTTCATGGGCAAGAAGGTGGGATTACACCTGACGGCTTGGTTCACATCTACGGGCAGTGGATATGGGGCTTTCAGGCTGCT GCAGACACAGTCAACGGCCTCGCCTTCCATCCCTCCCTGCCTATGGCTGTCTCTTCGTCCGGCCACCGTAGATTCCAAGTCCCTGACGACGAAGATAACA GCTTCCAACTCACCGGTAACGTCCCACATCCAATCATTTGGAGGAGTCTAGGCCCAGTGACCTTGAAATCATTGGTTGGTGACCCTATATCGACATACAC CAGAGGAGCGCCTGAAGGATCTTGA
AA sequence Show only first row Show all	>Lus10018434 pacid=23162164 polypeptide=Lus10018434 locus=Lus10018434.g ID=Lus10018434.BGIv1.0 annot-version=v1.0 MGDESAAQVDSTDDVATGQFTDIEANSSVLGETPLIGAADDQSYSYWPSVQFDVAPHRTYHFSQQFRGSTVSNNFLKGVKWSPDGSCFLSSSEDNKLRLF SLPDYYDGCDASAYAAAPCTDSYGASMVVDEGEPVYDFCWYPYMASSDPVSCVFATTTRDHPIHLWDATSGSLRCTYRAYDAVDEITAAISDAFNPAGTR IYVGYNKCIRGFNVHRPGRDFVQHSMLKGNKDGQTGVISSIAFSPTHGGMLATGSFSRSTAIYREDNMELLYLLHGQEGGITPDGLVHIYGQWIWGFQAA ADTVNGLAFHPSLPMAVSSSGHRRFQVPDDEDNSFQLTGNVPHPIIWRSLGPVTLKSLVGDPISTYTRGAPEGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21520			Transducin/WD40 repeat-like su...		Lus10018434 [exp]	0	1
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	10.3	0.8912
AT3G53940			Mitochondrial substrate carrie...		Lus10022597 [exp]	13.4	0.8798
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	13.7	0.8856
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003576 [exp]	14.1	0.8601
AT5G23880		ATCPSF100, EMB1...	ENHANCED SILENCING PHENOTYPE 5...		Lus10021705 [exp]	17.7	0.8806
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	23.0	0.8783
					Lus10008111 [exp]	24.9	0.8060
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	28.5	0.8798
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	32.3	0.8761
AT4G23540			ARM repeat superfamily protein...		Lus10035446 [exp]	33.6	0.8743

Compare expression of checked genes

Lus10018434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.