Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21470 552 / 0 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT5G57440 139 / 4e-39 GPP2, GS1 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 132 / 1e-35 GPP1 glycerol-3-phosphatase 1 (.1) AT1G56500 79 / 1e-15 haloacid dehalogenase-like hydrolase family protein (.1) AT4G11570 67 / 4e-12 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT2G38740 64 / 2e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G48420 63 / 7e-11 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 62 / 2e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G33255 42 / 0.0003 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028605 [exp] 613 / 0 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 607 / 0 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10006954 [exp] 141 / 3e-39 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10025466 [exp] 132 / 2e-36 AT5G57440 357 / 1e-126 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 87 / 5e-18 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 83 / 7e-17 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10002002 [exp] 74 / 4e-14 AT4G11570 491 / 9e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10035494 [exp] 73 / 5e-14 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Lus10023149 [exp] 68 / 2e-12 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G077200 [exp] 602 / 0 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 589 / 0 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.018G092500 [exp] 141 / 2e-39 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 75 / 3e-15 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 75 / 3e-15 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G104366 [exp] 72 / 1e-13 AT4G11570 494 / 9e-176 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.013G007800 [exp] 72 / 2e-13 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.003G127100 [exp] 69 / 8e-13 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) Potri.014G043500 [exp] 67 / 4e-12 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 61 / 3e-10 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01687 [flax] [poplar] Flavokinase Riboflavin kinase CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10018435 pacid=23162099 polypeptide=Lus10018435 locus=Lus10018435.g ID=Lus10018435.BGIv1.0 annot-version=v1.0 ATGTTAGCTTCAGGCAGCATGAAGAAGTTAGCATCAGGGGTGATTCTGGATTTGGATGGTACCCTTCTTAATACAGATAGCTTGGTTGGTGGGGTTATGA AGGTTTTCTTGGTAAAGTATGGCAAACAATGGGATGGTAGAGAAGTTCATAAGATCATCGGGAAGACTCACATGGAAGCTTCTGCTGTTATTGTACAAGA CTATGGACTTCCTTGTTCTACAGAAGAATTCGTTGCGGAAATCACTCCAATGTTCTCTGACCAATGGTGCAAGATCAAACCTCTCCCGGGTGCATATCGA TTGATCAATCACCTTCGTAGTCATAAAGTACCAATGGCGTTGGCCTCAAACTCTCCAAGGGCCAACATTGATGCTAAAATTTGTTGTCATCAAGGCTGGA AGGAGGCATTCTCGGTGATTATTGGTGGTGACGAAGTTAGAGCTGGGAAGCCATCTCCTGAGATATTTTTGGAAGCAGCTAAGAAGCTAAACATTGAGCC TTCCCATTGCCTAGTGATTGAAGATTCATTGCCTGGTGTCATCGGCGCTAAAGCTGCTGCAATGCAAGTGGTTGTTGTACCGTCTTTACCGAAGCAGTCT CATCTCTTCACAGCAGCAGCAGACGACGTGTTGAATTCTCTACACGATTTGCATCCTGAAAACTGGGGCCTGCCTCCCTTTGAAGATTGGATTGAAGGTA CTCTGCCGATAGAGCCATGGCACATTGGTGGCCCTGTAATCAAAGGATATGGCCGCGGCTCCAAGGTTCTTGGGATCCCCACAGCCAATCTATCAACGGA AGGATACTCGGACTTGCTCGCACAGCATCCCTCGGGGGTGTATTTCGGTTGGGCCAGGTTGGCAACTAGAGGTGTCTACAAAATGGCTATGAGCATTGGT TGGAACCCATACTTCAACAACACAGAGAAGACAATTGAGCCATGGCTGCTTCATGAGTTTGACGAGGATTTCTATGGGGAAGATCTCCGTCTCGTTATAG TTGGTTATATCCGGCCGGAGGCTAATTTCCCGACGCTCGAGAGCTTGATCGACAAGATTCGAGAGGACGGGAGGATTGCAGAGAAAGCACTTGATCTTGT TCCACGGTACTCAAAGTATAAGCATGATCCATACTTGAGAAGCTCTTCATTGTAG
AA sequence Show only first row Show all	>Lus10018435 pacid=23162099 polypeptide=Lus10018435 locus=Lus10018435.g ID=Lus10018435.BGIv1.0 annot-version=v1.0 MLASGSMKKLASGVILDLDGTLLNTDSLVGGVMKVFLVKYGKQWDGREVHKIIGKTHMEASAVIVQDYGLPCSTEEFVAEITPMFSDQWCKIKPLPGAYR LINHLRSHKVPMALASNSPRANIDAKICCHQGWKEAFSVIIGGDEVRAGKPSPEIFLEAAKKLNIEPSHCLVIEDSLPGVIGAKAAAMQVVVVPSLPKQS HLFTAAADDVLNSLHDLHPENWGLPPFEDWIEGTLPIEPWHIGGPVIKGYGRGSKVLGIPTANLSTEGYSDLLAQHPSGVYFGWARLATRGVYKMAMSIG WNPYFNNTEKTIEPWLLHEFDEDFYGEDLRLVIVGYIRPEANFPTLESLIDKIREDGRIAEKALDLVPRYSKYKHDPYLRSSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018435 [exp]	0	1
AT4G14605			Mitochondrial transcription te...		Lus10035227 [exp]	3.0	0.9023
AT4G14605			Mitochondrial transcription te...		Lus10032061 [exp]	11.0	0.8873
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Lus10037898 [exp]	11.1	0.8192
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	11.7	0.8358
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	11.7	0.8941
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10036858 [exp]	12.5	0.8719
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Lus10006210 [exp]	13.0	0.8712
					Lus10018660 [exp]	13.0	0.8549
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	13.4	0.8837
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	16.9	0.8785

Compare expression of checked genes

Lus10018435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.