Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21530 950 / 0 APC4 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 47 / 8e-05 TAF5 TBP-associated factor 5 (.1) AT4G33260 44 / 0.0005 AtCDC20.2, CDC20.2 cell division cycle 20.2, Transducin family protein / WD-40 repeat family protein (.1.2) AT4G33270 44 / 0.0005 AtCDC20.1, CDC20.1 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) AT4G29830 43 / 0.0006 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011250 [exp] 1401 / 0 AT4G21530 968 / 0.0 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) Lus10024447 [exp] 46 / 0.0001 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 45 / 0.0002 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G034900 [exp] 1062 / 0 AT4G21530 1077 / 0.0 anaphase promoting complex 4, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 50 / 8e-06 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G145800 [exp] 48 / 2e-05 AT4G29830 486 / 2e-174 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) Potri.013G048900 [exp] 46 / 0.0001 AT4G33270 766 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G021800 [exp] 44 / 0.0003 AT4G33270 767 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 44 / 0.0005 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 43 / 0.0007 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10018436 pacid=23162155 polypeptide=Lus10018436 locus=Lus10018436.g ID=Lus10018436.BGIv1.0 annot-version=v1.0 ATGGAAATGGACGATGCTTCCGAGCACGTTCTCCCGTTCCAGCTCCAGTTCGATAAGCCCCTTGCATCTCAGGTGAAAATCGCGGAGTGGAATCCGGAGA AGGATTTGTTGGCTATGGTCACCGATGACTCCAAAATCCTGCTCCATCGCTTCAATTGGCAGCGGCTATGGACGGTTTCTCCAGCTGGTATCACCTATGG ATTACCTGAGTTTTATCGGAATTGGTCAGGCAAGTCAATTACGTCTCTGTGCTGGCGTCCTGATGGTAAAGCGATAGCTATCGGTCTTGAAGATGGAACC ATCTCGTTGCACGATGTTGAGAGCGGAAAATCGTTGAGAAGCCTGAAGTCTCATACTGCTCCGGTGGTGTGTCTTAACTGGGAAGAGGAGAGTGAGCTGT TTCAGAGTGATTCTGGGAATTCGTTAGTGTATGAAGATCGCACTCCCCGTTTCTTTCCTCCAGCTCCAAGGGCTCCGCGAGTGGCTGGTGTTGTGACCAG CGATGCCAGCTTCATGGATGATAATGAAGATTCTTATAGGCTGCTCTCGAATTCGTCGTACCAACGGTTTAACATTCTTTGCAGTGGAGATAAAGATGGG AGCATATGTTTCAGTATCTTTGGAATATTTCCAATAGGAAAAGTTAATATACACAAATTTTCTATACCAACGCCACAGATTGATAAGGTTGTGACTCGGC AGCTTGCTAATGCTTCCATATGCAAGGTTGCATTGTCAAAGGACCTTTGCCAGTTGATTGTTCTGTTCTCTGGAGACCTTGTTGAAAGTACTGCTGCTGC TTCAGCATCAGATAAAATAGCCGGCCGTGGCATGCATGGCTTGGTGCTCGATACTTCTATATTTGGCAAGAGGAAGAACGAGCTTCATCAATTGGCCCAA CAAGCTTCTAACATTGAAGACTTGACTGAGGTTATCCGGGTGTCTTTGTCAGTGATGGTTAAACAATGGGCAGATGGTGTACAGACATTTAGCCAGAAGT TTGGTTCTCTGTCCACCCTGATTACCGATCATGGACTGGACTCCTCTCCCCAGGAAGAGCTTCTAAGCCTTTTAGGCGGTGCTCGCACTAGTCCAGCAGT TCATCAATTTTTAGTGAACTCTCTTGGAGAAGCTGGTGTCAAACGTGTTTCAAAAACAGTTTCCGGTTCTGGAAAAGAACTTCAACGTGTAGTGCTTGAC CATCTTCAGCCTGCTGCAGAAATAATTGCATTTAGGATGGGAGAACTTAGAGGTCTTTCAAGATGGCGTTCACGCTTCCAAGGTATAGGTTTGGATGAGA AACTTATTGCTGAAGCAACAGAAAAATCTGGCATGATGCTTGTACAAGTTGAGCGATTCATGAGAGTGCTCACAACCGTTGAGCAACAGTTTTCCAATTT CTTTAATTGGCTTCTCAAATCTATAAAGTTGCTGATGCAAGAACCAAATGATCAACTTCTACCATATAATAGTGAACTTGTTGTCATATTCCTAAAGTTC CTGTATGATCAAGATCCCGTTAGAAAGTTGCTGGATCCCACTGAAGTCGATCGCCCCGTTGAAGTTGACTCGGAAACAATGCTGAGAGTCCAGGAGTTAG TTCAGTACGGTGGATTTTCAGACACCGAATATCTTCGTAGGACATTAACCAAAGAGTTCGAACAAATGGAGTCAAGCTTCAAGGAGGCTTTTCTAATGCC ATTCACCACAATCTCAAGAAAGATACATTTCATTGATTTGTTGCCTCTCTTTCCTCTACCGTCCTCACCAGCATCTAGATCTTCGACGATTCCCATGTCG ATATCGTACTACGAGGATGCTTCTGAATCAAACGACGATGACTTTATGGATTACATCTGCTTCCAAGTTCCCAGCGAGTCCCTTCCCGTTGAAGGAAACT ACGTTGGCATTGTACGCGGGTTTATGAACGACCTGAAGAATCTTAAGAAGGGATCAGCCACTTTGGAAGCCGTGCTGCTTTCTATGCCTACTGGCTACAG CTGCACAGATCTGTCCTTATACAAGGACGGCCAAGTAGTTCTGCTACTGAACGGGACAACCAGCAGCCCTGAAGAATCATCCGGAGATGCTGTTGCCTGT ATGACGATCATGCAAGCTGACGATCTTTCATTCATGCCGATTCCGAATACCCGCCTAAGCCTCTGGAGAATGCATCACATTCAGGATTATGCTGTATCCC TGGAGATAGAGAATGAAAAGTCTCGCAGCATTCCTCATTCCGTCGTTGCTCCATTGGCTGTTAGCGCAACGAGGGGCGTGGCGTGTGTGTTTGCTGCAAG GAAGCGTGCTCTGGTGTACATATTGGAAGAAGATGAAGACGACAACAGTCGCAAAGTCAAAACAGCCTTTGTACCTCGAAATGCAATCGGGAGAGTTGGG ACGAAGATTGTTCGACATCACTGCCGGCAACTCCTTAATTCTAAGACCCTCAGTGGTTCCTTTTCATGTTTAACCAGCAAGGACGCCACCTCTGACCGAG ATCTCTTCTCAGCCTGGTCTCGTGAGCGTTGTGGAGCTCTGAACTTCCGAAAAAATGATCAAATGGACCGAAATGGTTTAACTGAGGGGATTCTATACTA A
AA sequence Show only first row Show all	>Lus10018436 pacid=23162155 polypeptide=Lus10018436 locus=Lus10018436.g ID=Lus10018436.BGIv1.0 annot-version=v1.0 MEMDDASEHVLPFQLQFDKPLASQVKIAEWNPEKDLLAMVTDDSKILLHRFNWQRLWTVSPAGITYGLPEFYRNWSGKSITSLCWRPDGKAIAIGLEDGT ISLHDVESGKSLRSLKSHTAPVVCLNWEEESELFQSDSGNSLVYEDRTPRFFPPAPRAPRVAGVVTSDASFMDDNEDSYRLLSNSSYQRFNILCSGDKDG SICFSIFGIFPIGKVNIHKFSIPTPQIDKVVTRQLANASICKVALSKDLCQLIVLFSGDLVESTAAASASDKIAGRGMHGLVLDTSIFGKRKNELHQLAQ QASNIEDLTEVIRVSLSVMVKQWADGVQTFSQKFGSLSTLITDHGLDSSPQEELLSLLGGARTSPAVHQFLVNSLGEAGVKRVSKTVSGSGKELQRVVLD HLQPAAEIIAFRMGELRGLSRWRSRFQGIGLDEKLIAEATEKSGMMLVQVERFMRVLTTVEQQFSNFFNWLLKSIKLLMQEPNDQLLPYNSELVVIFLKF LYDQDPVRKLLDPTEVDRPVEVDSETMLRVQELVQYGGFSDTEYLRRTLTKEFEQMESSFKEAFLMPFTTISRKIHFIDLLPLFPLPSSPASRSSTIPMS ISYYEDASESNDDDFMDYICFQVPSESLPVEGNYVGIVRGFMNDLKNLKKGSATLEAVLLSMPTGYSCTDLSLYKDGQVVLLLNGTTSSPEESSGDAVAC MTIMQADDLSFMPIPNTRLSLWRMHHIQDYAVSLEIENEKSRSIPHSVVAPLAVSATRGVACVFAARKRALVYILEEDEDDNSRKVKTAFVPRNAIGRVG TKIVRHHCRQLLNSKTLSGSFSCLTSKDATSDRDLFSAWSRERCGALNFRKNDQMDRNGLTEGILY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21530		APC4	anaphase promoting complex 4, ...		Lus10018436 [exp]	0	1
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	5.6	0.8900
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	7.7	0.8821
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10032469 [exp]	11.7	0.8856
AT5G64630		MUB3.9, NFB1, N...	FASCIATA 2, Transducin/WD40 re...		Lus10020888 [exp]	18.3	0.8455
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	20.0	0.8344
AT3G27640			Transducin/WD40 repeat-like su...		Lus10032126 [exp]	23.6	0.8711
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	24.8	0.8681
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	25.2	0.8803
AT4G02110			transcription coactivators (.1...		Lus10002432 [exp]	25.8	0.7788
AT4G31400		CTF7	damaged DNA binding;DNA-direct...		Lus10021277 [exp]	32.0	0.8493

Compare expression of checked genes

Lus10018436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.