Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57580 727 / 0 Calmodulin-binding protein (.1) AT2G18750 705 / 0 Calmodulin-binding protein (.1.2.3) AT4G25800 702 / 0 Calmodulin-binding protein (.1.2) AT2G24300 605 / 0 Calmodulin-binding protein (.1.2) AT4G31000 501 / 1e-171 Calmodulin-binding protein (.1.2) AT5G62570 325 / 2e-104 Calmodulin binding protein-like (.1.2) AT1G73805 302 / 8e-96 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT5G26920 248 / 7e-74 CBP60G Cam-binding protein 60-like G (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011248 [exp] 1182 / 0 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 713 / 0 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 707 / 0 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 609 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 530 / 0 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 333 / 8e-106 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029861 [exp] 326 / 3e-103 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 318 / 9e-101 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2) Lus10043463 [exp] 259 / 4e-77 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035100 [exp] 885 / 0 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 873 / 0 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 834 / 0 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 757 / 0 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 652 / 0 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 633 / 0 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.015G071800 [exp] 383 / 1e-125 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G077000 [exp] 367 / 3e-119 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 358 / 7e-118 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1) Potri.015G045300 [exp] 355 / 6e-116 AT1G73805 414 / 1e-141 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10018437 pacid=23162095 polypeptide=Lus10018437 locus=Lus10018437.g ID=Lus10018437.BGIv1.0 annot-version=v1.0 ATGCAGGCGAAGTCGTATTTGGAGAGGGCTAACGGGAAGAGAGGGCTGGAAGGGAGCTCCGGCGAGGAAGGTCAGCCGGATAGGAAACGGCCGGCTTTAG CTAGTGTGATTGTTGAAGCTTTGAAGGTGGATAGTCTGCAGAAGCTTTGCTCGTCGTTGGAGCCGATTCTTCGGAGAGTTGTTAGTGAAGAAGTGGAGCG TGCTTTGGCGAAACTCGGTCCTGCTAGACTCACGTCGGGGTCTTCCCCGAAGTATATTCAAGGCCCAGATGGTAGAAACCTGCAGATGCATTTCAGGTCA AGGTTATCCCTTCCCTTGTTCACCGGCGGGAAAGTAGAGGGCGAACAGGGCACGGCAATCCACATTGTGCTGATCGACGCCAACACGGGCCATGTGGTGA CTTCAGGTCCCGAATCCTCGGTGAAACTGGACGTCGTCGTTTTGGAAGGAGATTTCAATAATGAAGATGATGACACGTGGACTGCCGAGGAGTTTGAGTC TCACGTGGTGAAAGAACGCGAGGGGAAAAGGCCGCTGCTTACCGGAGATCTTCAGGTGACTTTGAAAGAAGGCGTGGGAAGTCTCGGTGAGCTGACGTTT ACTGATAACTCGAGCTGGATTAGGAGCAGGAAGTTCAGGCTGGGTTTGAAGGTTGCTTCAGGGTGTTGTCAAGGGGTTCGAATCCGTGAAGGAAAGACTG ATGCATTTACTGTCAAGGACCACAGAGGAGAATTGTACAAGAAGCACTACCCGCCTGCTTTGAGCGACGAAGTCTGGCGATTGGAGAAGATCGGTAAAGA CGGATCTTTCCACAAACGGTTGACCAAGAACGGGATCTTTACAGTGGAGGACTTCCTGCGACTCGAGGTTCGCGACTCGCAAAAACTGCGCAATATTCTT GGAAGTGGCATGTCGAACAAGATGTGGGACGTTCTGAAAGAGCACGCCAAAACTTGTGTCCTCGGCGGAAAGTTCTACGTCTACTATGCTGAAGATGCAC ATAACATCGGTGTGGTATTCAACAATATCTATCAGTTAAGTGGGTTGATTGCTGATGGGCAGTACCATTCTGCTGACACTCTTTCTGACAATCAGAAGGT CTACGTGGACGGCCTGGTGAAAAGTGCGTACGACAACTGGTCACAAGTTGTAGAGTATGATGGGAACTCCTTCATGGATTTCAAGTCGAATGAGAACGAA GTGGAAAACGGTGTGCAAGACCTTCTGGGATCATATGGCCACCAGCAGCAGCAGCAGCAGCATCATCATCATGTGGCGTTACCAGGCGTGCCGGTACAAG GCCCTCCAGCTCCAGAGCAGCAGCGTCCTACCATGACCGCAGTGCCAACAATTCCAGGGTATACCAACAATATGCCTCCAGAATTCGCGATCCATTCGCA AGACGAGAATCTGAACTCTTCTTCCTTCATATTCGACTTGAATCCGGCTTCACAGCAGCACCAGTACCACCCAAGGAACAACCATTTACTAGCTCTAGGT CCCCCACAACCCTCCACGTCATCAACTACAACCTTCCACGACGGCAATGCAGCACCACCGCCGGTGAACCTGGCCTCCCATAGAGGAGTTGACGACTTCT TCACGGAGGAGGAGATCCGACTGAGAAGCCACGAGATGCTCGAGAACGACGATATGCAGAACCTCCTCCGAATCTTCAGCATGGGAGGAGTCGGAGTAGG AGGTGGAAATGGTGGTCAAGGCTTCCATTCCTTTGAAGATGGCTACCCTTATTCCTCGTCGACTCCATACATGGCCGGGAACGGGTCATCATCCTCGAGC TATGGATTTGCAGACGAGCAGTCCCGTTCGTCAGGGAAGGCTGTGGTCGGGTGGCTGAAGCTGAAAGCAGCATTGAGATGGGGCATTTTCATAAGGAAGA AAGCTGCCGAAAGGCGCGCTCAGCTCGTTGAACTCGACGATTAG
AA sequence Show only first row Show all	>Lus10018437 pacid=23162095 polypeptide=Lus10018437 locus=Lus10018437.g ID=Lus10018437.BGIv1.0 annot-version=v1.0 MQAKSYLERANGKRGLEGSSGEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPILRRVVSEEVERALAKLGPARLTSGSSPKYIQGPDGRNLQMHFRS RLSLPLFTGGKVEGEQGTAIHIVLIDANTGHVVTSGPESSVKLDVVVLEGDFNNEDDDTWTAEEFESHVVKEREGKRPLLTGDLQVTLKEGVGSLGELTF TDNSSWIRSRKFRLGLKVASGCCQGVRIREGKTDAFTVKDHRGELYKKHYPPALSDEVWRLEKIGKDGSFHKRLTKNGIFTVEDFLRLEVRDSQKLRNIL GSGMSNKMWDVLKEHAKTCVLGGKFYVYYAEDAHNIGVVFNNIYQLSGLIADGQYHSADTLSDNQKVYVDGLVKSAYDNWSQVVEYDGNSFMDFKSNENE VENGVQDLLGSYGHQQQQQQHHHHVALPGVPVQGPPAPEQQRPTMTAVPTIPGYTNNMPPEFAIHSQDENLNSSSFIFDLNPASQQHQYHPRNNHLLALG PPQPSTSSTTTFHDGNAAPPPVNLASHRGVDDFFTEEEIRLRSHEMLENDDMQNLLRIFSMGGVGVGGGNGGQGFHSFEDGYPYSSSTPYMAGNGSSSSS YGFADEQSRSSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLVELDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57580			Calmodulin-binding protein (.1...		Lus10018437 [exp]	0	1
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	3.3	0.8715
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	3.7	0.8337
AT2G15580			RING/U-box superfamily protein...		Lus10001688 [exp]	4.7	0.8103
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	6.5	0.8233
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	8.7	0.8322
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	11.2	0.8022
AT2G46080			unknown protein		Lus10005122 [exp]	12.6	0.8315
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	12.8	0.7841
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	13.3	0.8212
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	13.6	0.8294

Compare expression of checked genes

Lus10018437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.