Plant FIBer expression Database

Lus10018438 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11240 87 / 2e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011247
[exp]
263 / 1e-90 AT1G11240 122 / 6e-35 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G043400
[exp]
112 / 3e-31 AT1G11240 115 / 4e-32 unknown protein
Potri.004G035200
[exp]
86 / 4e-21 AT1G11240 94 / 6e-24 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09805 Nop25 Nucleolar protein 12 (25kDa)
Representative CDS sequence
>Lus10018438 pacid=23162141 polypeptide=Lus10018438 locus=Lus10018438.g ID=Lus10018438.BGIv1.0 annot-version=v1.0
ATGGCGGACGAAATTCAATACAGCGAGCCACAGACATCGGCGCACATAAAGAAACGATCGCTGAGGAACAAATCTCTCGCCGTATCGTTCAACGAGAAGG
ATCTCAAAGACTACGTCAATGGATTCCACAAGAGGAAGAAGAAGAGACGAAAGGAAGCTCACAAGCAGCAAGACGAGGCTCTGAGGCGAAAGCGCATCGA
ACTGCGCAAGAAGAGGAAGTTGGAGAACGAAGTTTATCCAAACGAAGGAGATGAAGGGGGCGGTAAGGATGACGATGACGATGACGAGGAGGAAGATGAA
GATACTGAGCCAGCTACTTCAGTTGCTGGAACAACAATGTACGACCATGGGGACTTGAAGGTAACCGTGACAACAAGCGAGATCTCCCGTGAGGACGACT
ACGAGCCAAAGGAATCAGTCCCACGAGCAATGGTGCTTCCTAAGAAGAACCAGAAGTTATCCATCAGCAAGAAGCAACCATCGTTCAAGAAATCCGCCAA
CCGCAGATCAGGGGCAAAGACTCAGTCCAAACGAGATAAACGGAAAGCGAAGATAACTGACCGCAGGCGATAA
AA sequence
>Lus10018438 pacid=23162141 polypeptide=Lus10018438 locus=Lus10018438.g ID=Lus10018438.BGIv1.0 annot-version=v1.0
MADEIQYSEPQTSAHIKKRSLRNKSLAVSFNEKDLKDYVNGFHKRKKKRRKEAHKQQDEALRRKRIELRKKRKLENEVYPNEGDEGGGKDDDDDDEEEDE
DTEPATSVAGTTMYDHGDLKVTVTTSEISREDDYEPKESVPRAMVLPKKNQKLSISKKQPSFKKSANRRSGAKTQSKRDKRKAKITDRRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11240 unknown protein Lus10018438
[exp]
0 1
AT4G30220 RUXF small nuclear ribonucleoprotei... Lus10037606
[exp]
1.7 0.8960
AT1G05205 unknown protein Lus10027173
[exp]
3.5 0.8849
AT3G15790 MBD11, ATMBD11 methyl-CPG-binding domain 11 (... Lus10002168
[exp]
3.7 0.8853
AT3G59650 mitochondrial ribosomal protei... Lus10006114
[exp]
4.0 0.8830
AT2G47640 Small nuclear ribonucleoprotei... Lus10007876
[exp]
4.2 0.8662
AT5G02530 RNA-binding (RRM/RBD/RNP motif... Lus10040851
[exp]
4.5 0.8778
AT5G38890 Nucleic acid-binding, OB-fold-... Lus10004763
[exp]
6.0 0.8629
AT1G07950 MED22B Surfeit locus protein 5 subuni... Lus10023466
[exp]
6.5 0.8653
AT3G12390 Nascent polypeptide-associated... Lus10026133
[exp]
6.9 0.8489
AT2G21240 BBR_BPC BPC4, BBR/BPC4,... basic pentacysteine 4 (.1.2) Lus10031078
[exp]
10.5 0.8529

Lus10018438 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.