Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21540 572 / 0 SPHK1 sphingosine kinase 1 (.1.2.3) AT4G21534 563 / 0 SPHK2 sphingosine kinase 2, Diacylglycerol kinase family protein (.1) AT5G23450 105 / 1e-23 ATLCBK1 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) AT5G51290 73 / 2e-13 Diacylglycerol kinase family protein (.1) AT2G46090 46 / 3e-05 Diacylglycerol kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011246 [exp] 972 / 0 AT4G21540 588 / 0.0 sphingosine kinase 1 (.1.2.3) Lus10010161 [exp] 93 / 8e-20 AT5G23450 993 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10017366 [exp] 93 / 1e-19 AT5G23450 1076 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Lus10016714 [exp] 77 / 1e-14 AT5G51290 635 / 0.0 Diacylglycerol kinase family protein (.1) Lus10007917 [exp] 49 / 6e-06 AT2G46090 453 / 2e-160 Diacylglycerol kinase family protein (.1) Lus10027086 [exp] 48 / 2e-05 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036388 [exp] 45 / 8e-05 AT2G46090 439 / 9e-155 Diacylglycerol kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G043500 [exp] 677 / 0 AT4G21540 651 / 0.0 sphingosine kinase 1 (.1.2.3) Potri.008G002100 [exp] 94 / 6e-20 AT5G23450 995 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.010G255600 [exp] 91 / 4e-19 AT5G23450 1011 / 0.0 long-chain base (LCB) kinase 1 (.1), long-chain base (LCB) kinase 1 (.2), long-chain base (LCB) kinase 1 (.3) Potri.004G233300 [exp] 67 / 1e-11 AT5G51290 726 / 0.0 Diacylglycerol kinase family protein (.1) Potri.002G162900 [exp] 54 / 2e-07 AT2G46090 492 / 3e-175 Diacylglycerol kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10018439 pacid=23162130 polypeptide=Lus10018439 locus=Lus10018439.g ID=Lus10018439.BGIv1.0 annot-version=v1.0 ATGGACGAACCCGGGTCATCGCCGCAGTCAGTGTTCTCCAACCGGGTTAAGATCAACGGCTCGTCAGTCCCGGCGGCGCTGACTCTCACCTCCAAAGGCA AGCTCCGGTGGACTGACGGCCACGATCAGCAGCGGTGGCTGGTGCTGGAGAAGCAGTTGCTCGGATTATCAGTCATCGATGGTACGAAGATAGTGCTGAA GACTGTCGTACACAGCGAAGCAGCTGGCTGGTGCTGCTGCTGCTGTATTGGCGGGAGCAGGGGAGATCAGCTGGTGAGGAAGGATTTCGTATTCGAGCCT GTTGATGGCGATTCGTTGAACCTCTGGCGCCAGTGCATCGGCGATTACCTTGATTCGTTAGGTCGGCCGAAGAGGCTGCTTGTGTTTGTGAACCCGTACG GTGGGAAGAGAACTGCTCCCAAGGTGTATTGCGATCATGTGAAGCCGTTACTGGACGATGCTGGTGTACAGATAACGTTGCAAGAAACGGAGCATCGGCT TCATGCCAAGGAAGTTGTGAGCAGCCTGGAACTTTCCAAATACGATGGCATTGTTTGTGTCAGCGGAGATGGCATCCTCGTAGAGGTGGTAAATGGTCTT CTGGAGAGGCAGGACTGGAAGGATGCAATAAAGATGCCTCTTGGAGTCGTCCCTGCAGGTACAAGTAATGGCATGGTAAAATCCCTTCTAGATGCAGCTG GGGAACCCTGCACGCCGTCAAATGCAGTTCTTGCGATCATACGAGGACGTAAAACCTCACTGGATGTAGCCACTGTCTTGCAAGGAGACTCCAAATACTA CAGCGTTTTGATGCTTGCATGGGGTATGCTAAGTCTAGTGGCGGATATCGACATCGAATCTGAGAAATATCGATGGATGGGGAATTCTCGCATCGACTTC TATGCTATTCAACGGCTATTCAGTCTAAGGCAGTACAATGGGCGCATCTCTTTCGTGCCCGCACCAGGCTTCGAATCCTACGGAGAGCCGTTCAATCACA ACACTGGACTCACAAGCTTTCGAGAATCCCGCGATTTCAGCAGGGAAAAGCTCGTAAAAGTCCAACCGTACGGTTACCATGGACCCGACCTCGAATTGCT GAACCGGGAGTGGCGGACGATCGAAGGACCCTTCGTCTCGGTCTGGCTTCACAATGTAGCTTGGGGTGGTGAGAATACCATGGCAGCACCTGATGCAAAG TTCTCAGATGGCTGTTTGGACTTGGTGCTCATCAAGGATTGCCCAAAGCTAGCTTTGCTCTCGTTCATGACAGAATTAAGTAATGGCGGTCATGTGAAAT CCCCACACGTTATGTACCTCAAGGTGAAAGCGTTCATCTTGGAGCCCGGCCAACGAGTGAAGGAGCCCTCCGTCGGAGGGATCATAGACGTGGACGGCGA GGTGTTGGCAAGAGGAAACGGGACGTACAAGTGCGAGGAAGAAACTCTGATGGCTTATGACAGGCTACTCATCACTGTGAACCAAGGCTTAGCCACCATC TTTTCTCCTGTCTAG
AA sequence Show only first row Show all	>Lus10018439 pacid=23162130 polypeptide=Lus10018439 locus=Lus10018439.g ID=Lus10018439.BGIv1.0 annot-version=v1.0 MDEPGSSPQSVFSNRVKINGSSVPAALTLTSKGKLRWTDGHDQQRWLVLEKQLLGLSVIDGTKIVLKTVVHSEAAGWCCCCCIGGSRGDQLVRKDFVFEP VDGDSLNLWRQCIGDYLDSLGRPKRLLVFVNPYGGKRTAPKVYCDHVKPLLDDAGVQITLQETEHRLHAKEVVSSLELSKYDGIVCVSGDGILVEVVNGL LERQDWKDAIKMPLGVVPAGTSNGMVKSLLDAAGEPCTPSNAVLAIIRGRKTSLDVATVLQGDSKYYSVLMLAWGMLSLVADIDIESEKYRWMGNSRIDF YAIQRLFSLRQYNGRISFVPAPGFESYGEPFNHNTGLTSFRESRDFSREKLVKVQPYGYHGPDLELLNREWRTIEGPFVSVWLHNVAWGGENTMAAPDAK FSDGCLDLVLIKDCPKLALLSFMTELSNGGHVKSPHVMYLKVKAFILEPGQRVKEPSVGGIIDVDGEVLARGNGTYKCEEETLMAYDRLLITVNQGLATI FSPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	0	1
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	1.0	0.8657
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	2.0	0.8627
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	2.0	0.8563
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	2.4	0.8619
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	3.9	0.8557
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	5.5	0.8204
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	6.9	0.8534
AT5G61390			Polynucleotidyl transferase, r...		Lus10015719 [exp]	7.1	0.7556
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10034843 [exp]	8.0	0.8188
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10008631 [exp]	9.5	0.8244

Compare expression of checked genes

Lus10018439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.