Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32010 442 / 1e-141 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT2G30470 427 / 1e-135 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G21550 322 / 8e-97 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT3G26790 89 / 6e-19 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT3G24650 92 / 9e-19 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 80 / 1e-15 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT2G36080 74 / 2e-14 B3 ABS2, NGAL1 AP2/B3-like transcriptional factor family protein (.1.2) AT1G13260 72 / 3e-13 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT2G46870 71 / 8e-13 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT5G06250 70 / 1e-12 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011245 [exp] 1046 / 0 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10022741 [exp] 315 / 1e-93 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 228 / 5e-62 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 210 / 7e-56 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10014169 [exp] 104 / 1e-22 AT4G21550 237 / 4e-68 VP1/ABI3-like 3 (.1) Lus10012572 [exp] 93 / 4e-20 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10022820 [exp] 94 / 6e-20 AT3G24650 313 / 1e-100 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 92 / 1e-19 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10011888 [exp] 89 / 1e-17 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035300 [exp] 728 / 0 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.011G043600 [exp] 719 / 0 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.013G157500 [exp] 378 / 2e-116 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.019G130300 [exp] 330 / 2e-98 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.016G136500 [exp] 325 / 2e-96 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.006G108300 [exp] 238 / 2e-65 AT4G32010 743 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.017G061200 [exp] 87 / 3e-18 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.002G252000 [exp] 90 / 4e-18 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 86 / 8e-18 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 86 / 3e-17 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10018440 pacid=23162115 polypeptide=Lus10018440 locus=Lus10018440.g ID=Lus10018440.BGIv1.0 annot-version=v1.0 ATGACTACTCCGTCACCGTCTCCTCCTCCTCCGCCGCCTCAGCCTCCCTCGACTCCCCATCCTCCCCCGCCAACTGCTCCCGCGCCCCCGGCCTGGGCCA AGTGTTTCAATTCCGTCTGCTCGGAGAAGAAGTCCAAGAAAGCCTGGCGTCTCCGTTCCGGCGAGCAAGCCGAGCTCTGCGATCCCTGCTTTGCTACGTA TGAGGAAGGTAGATTCTGCGAGACTTTTCACTTGCATGACGCTGGTTGGAGGTGCTGTGAGTCCTGCAAAAAGCGTGTGCACTGTGGCTGTATAGTCTCA GTTAGTGCCTTTACATTATTGGATACCGGTGGCATTGAGTGTGTGACTTGCGCAAGGAAGCATGCTGTTGTGACATCATCAAATCCTACATGGCAACCAG CTTTCTATTACCATCGATATATAGCTGACAGAGGCAAGGATGCTTCTGTAAAAAAATTGAACTACTTAGCTAAATCAGGTCCTGTGCCGTGGAGGCAAGC ACCTAGTTTGTTCAATTCTTCTATTACTCAGACTGTTCCACATCCTATGATTCATTCTGAAGCTGACAGGCTCAGTGCTACTGAGAAATTATCTTCTGCT TCCCTTGAAAAAGGAAAAACCGATAATTCCGTAATTGGAAATTTGAAGCACAGCTCAGGAGACAAAATTGAGAACGGTCATCCAGGTCCATCTAATGTGG AACGACAATCTTCTTCTATAAGGGAAGATTCATCTACTTCACAAATTGGATTTGGTAGAACCTACACTTCTATAAATGAAACAAAGGGGAAACAACCTGG TTGTTCTACGATTCCTATCCCGGCAACTTCATCGCCACTTGTCGTGCAGAACGGAGGAGGTGATGCACCTGTTGAGCCTCGTCCTCGTGGAAGGCCCGGT GGAAAAAGCCAGTTACTTCCGAGGTACTGGCCAAGGTTTACTAGTGAGGAGCTGCAACGAATATCTGGGAAAACAAATGCTGTAATAACTCCTCTGTTTG AGAAAATGCTGAGTGCTAGTGATGCTGGCCGAGTCGGGCGATTGGTGCTGCCCAAAAAATGTGCCGAGACCTATTTGCCACCAATTTCACAAGCTGAAGG TCTGCCTCTGAAGGTCCACGATTATACAGGCAAGGAGTGGGTATTCCAATTCCGCTTCTGGCCCAATAACAACAGCAGGATGTACGTTCTGGAGGGAGTT ACTCCTTGCATTCAGAGCATGTTCTTGCAAGCTGGTGACATTGTGACGTTCAGTCGGTTAGATCCGGGAGGAAAATTGGTGATGGGATTCAGAAAAGCTA TTAACGTGAATTCGCCATCTTCTGAATACCCGGCTATCTCAAATGCACAGGATAGTGAATCAACCAACCCTCCAGCTGGCACTTCTGGAAATGGAGAAGG TGAGGTGTCCGATCGTCCTCCATGGTATAAGGTTGACAAGTCGGATTACATTGCCACTCCTTCAGAAGTTATCGCTGCCAAACCTTCGTCGAAAAAGAGG AAGAACGGCAGCAGCGTATCGGGTTCGAAGGGCAAGAGCCTGAAACTGGACAGTGACGATCTGATTCAACTGCAGGTAACGTGGGAAGAATCACAAGGGT TGTTCCGCCCTCCTGCGGAACATCCTATTCCCAGCAGCGTTGTTTCAATTGACGGATATGATTTCGAGGAATTCGAGGAGGCACCGGTAATTGGGAAGCC GACGATTTTAGCAACTGATAAAGTGGGTAACAAATTCCAATGGACTCAATGTGAAGATTGTTCGAAATGGCGAAAAATACCTCTCGATGCTCTTCTTCCT TTCCAATGGACTTGTTCTCGTAACTTATGGGATCTCGAAAAGTATATATATATTGGAACTCTACGTCCTCTTATGGCTCAGATTGCTTGTATTCCGTCGT TAGTCTTAAATTGTGATTCAAATGCCTTGTCTTTCAGAGCATCGTGCGTAGCTGATCAAGAATCGAGTAGAGAACTGCTCAAAGATCTTCTGCCTCCCCA ACCCTTAGCTGCTCCCAAGAAACTGAAGGCTGCTGCTATACCGGAAAAGGACGGTGGAGAAGCTGCCGTTGCAGCGGGAGGAGGGACCGATGTGATTCTA GAAGAAGGCGGCGCCATGACGACAAAGCATCCTCGACAAAAGCCTGGATGCTCCTGCATCGTGTGCATCCAGCCTCCGAGTGGGAAAGGCCCCAAGCACA AGCCGGACTGTACATGCACCGTCTGCGAAGCTGTGAAGCGGCGCTTCACCACTCAACAGATCAAGAGGAACGAGAGGAAAGAAGCCGAATCTCAACAACA AAAGCAGCTACCTCCGCCAGCTCATCAACTGCCAGAGACGACTGGCGGTCATGATGATGACGATGATGATGCCGCGGATCCTCCGAATTCAGGTGAAACC GGAAACAATAGCAGCAGCAGCGATCAGGCGAGCAAGAGAATGAAATTAGCCTCCAGCTCGCCTTTTAAAGGGCAAATCGACTTGAACATCCAGCCAGAAC GAGAGGAAGAAGCTTTGCCTGCCTCGGACAGCGCGTCCACGAAGATGCTGCACAATGTAGAAGAGATGTCCGCATCAAGGCAGCAGAAGGTGTCTTCGTC TTCGTCGCCAACCTATGGAAGTGACGGTGCTCGCCAGCCCGAGCAGACAACGTCGCCACCTAATGATGCTAGTCAGCTGGCGAGTAAGCTGATCTTCGAT GCCGCATTACAGATGAAGACGGTATCTCAGACCTATGGCAACGATGGTAATAATACTCAACAACTCGCAACCGGCGATCAGCAGACGCTCGTCGCAGCAG GCGAAGGAAAATCGACCGAAAGTGACGACTCGTCACTAGCAAAACCAACAGAAGAGGCATTACCTGCATCTGCCTCTCCCCAGCAGCTACTAGACAGCAA CCTACCAAATAACAATAATCCTCCTACTCCCCCGAAACCGCAATCTACAACCAGCCTCGATTGCCAAACCCGAGTGACGATGACTCAGTGA
AA sequence Show only first row Show all	>Lus10018440 pacid=23162115 polypeptide=Lus10018440 locus=Lus10018440.g ID=Lus10018440.BGIv1.0 annot-version=v1.0 MTTPSPSPPPPPPQPPSTPHPPPPTAPAPPAWAKCFNSVCSEKKSKKAWRLRSGEQAELCDPCFATYEEGRFCETFHLHDAGWRCCESCKKRVHCGCIVS VSAFTLLDTGGIECVTCARKHAVVTSSNPTWQPAFYYHRYIADRGKDASVKKLNYLAKSGPVPWRQAPSLFNSSITQTVPHPMIHSEADRLSATEKLSSA SLEKGKTDNSVIGNLKHSSGDKIENGHPGPSNVERQSSSIREDSSTSQIGFGRTYTSINETKGKQPGCSTIPIPATSSPLVVQNGGGDAPVEPRPRGRPG GKSQLLPRYWPRFTSEELQRISGKTNAVITPLFEKMLSASDAGRVGRLVLPKKCAETYLPPISQAEGLPLKVHDYTGKEWVFQFRFWPNNNSRMYVLEGV TPCIQSMFLQAGDIVTFSRLDPGGKLVMGFRKAINVNSPSSEYPAISNAQDSESTNPPAGTSGNGEGEVSDRPPWYKVDKSDYIATPSEVIAAKPSSKKR KNGSSVSGSKGKSLKLDSDDLIQLQVTWEESQGLFRPPAEHPIPSSVVSIDGYDFEEFEEAPVIGKPTILATDKVGNKFQWTQCEDCSKWRKIPLDALLP FQWTCSRNLWDLEKYIYIGTLRPLMAQIACIPSLVLNCDSNALSFRASCVADQESSRELLKDLLPPQPLAAPKKLKAAAIPEKDGGEAAVAAGGGTDVIL EEGGAMTTKHPRQKPGCSCIVCIQPPSGKGPKHKPDCTCTVCEAVKRRFTTQQIKRNERKEAESQQQKQLPPPAHQLPETTGGHDDDDDDAADPPNSGET GNNSSSSDQASKRMKLASSSPFKGQIDLNIQPEREEEALPASDSASTKMLHNVEEMSASRQQKVSSSSSPTYGSDGARQPEQTTSPPNDASQLASKLIFD AALQMKTVSQTYGNDGNNTQQLATGDQQTLVAAGEGKSTESDDSSLAKPTEEALPASASPQQLLDSNLPNNNNPPTPPKPQSTTSLDCQTRVTMTQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	1.4	0.8699
AT1G06230		GTE4	global transcription factor gr...		Lus10017661 [exp]	4.9	0.8410
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	6.9	0.8052
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	8.0	0.7982
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10013372 [exp]	9.9	0.8247
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10031647 [exp]	10.6	0.8224
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	11.0	0.7852
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	13.8	0.7914
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10032141 [exp]	18.2	0.7538
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	19.8	0.8049

Compare expression of checked genes

Lus10018440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.