Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61290 468 / 4e-168 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT1G11250 443 / 4e-158 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT4G03330 405 / 3e-143 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G11820 346 / 9e-120 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 307 / 5e-104 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G08560 251 / 3e-82 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT3G03800 250 / 5e-82 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 236 / 2e-76 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT2G18260 191 / 4e-59 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G46860 57 / 4e-09 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011244 [exp] 563 / 0 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10006735 [exp] 499 / 3e-180 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10020089 [exp] 481 / 9e-172 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10016173 [exp] 363 / 4e-126 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 361 / 6e-125 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 357 / 8e-124 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 353 / 2e-122 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021988 [exp] 282 / 1e-94 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1) Lus10042527 [exp] 280 / 9e-94 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035400 [exp] 487 / 2e-175 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 478 / 4e-172 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.006G202200 [exp] 365 / 2e-127 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 352 / 5e-122 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.013G053200 [exp] 292 / 2e-98 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 286 / 3e-96 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 248 / 4e-81 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 226 / 5e-72 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 209 / 4e-66 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 199 / 1e-62 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10018441 pacid=23162189 polypeptide=Lus10018441 locus=Lus10018441.g ID=Lus10018441.BGIv1.0 annot-version=v1.0 ATGAATGATCTTCTTTCGAGCTCGTTCAAAAAATACAGCGACCTGAGGCAGCAGTCTCAGACGGATGATCTCGAGGCCGGGAACTCGAACTCGAACCTGG ACAAGTTCTTTCAGGACGTCGAGAGTGTCAAGGATGACATGAAATCGGTGGAGAAGATGTACAAATCGATACAAGAGGCGAACGAGGAGTGCAAGGTCTT GCACAATGCCAAGAGCGTGAAGGCTATGAGGGCCAAGATGGACGCCGACGTTGGCCAGGTCCTGAAGAGGGTGAAGCTCATCAAGGGGAAGCTTGAAGCC CTTGAGAGGTCGAATGCTGCTGCGCGCAGCATTGCAGGGTGCGGTCCAGGTTCCTCTGCGGACCGCACCAGGACGTCTGTAGTGGGTGGGTTGGGTAAGA AGCTGAAGGACCTGATGGACGACTTCCAAAACCTGAGGGCTAAGATGTCGGCCGAGTACAAGGAGACCGTGGAGAGGAGGTACTATACCATTACCGGGGA GAAGGCGAGCGAGGACTTGATCGATGACCTTATCTCTAGCGGGGAGAGCGAGAGCTTCCTGCAGAAGGCGATCCAGGAGCAAGGCAGGGGCCAGATTCTC GACACGATATCGGAGATCCAGGAGAGGCACGACGGGGTGAAGGAGATCGAGAAGAACTTGATCGAGCTGCATCAGGTCTTCCTCGACATGGCTGCCCTCG TCGAGGCTCAGGGGCACCAGCTGAACGACATAGAGAGCCACGTGATGCACGCAAGCTCGTTCGTGCACCGCGGGACGGAGCAGCTGCAGGAGGCTAGAGA GTACCAGAAGAGCTCAAGGAAGTGGACTTGCTATGCCATCATTCTTGGTCTTGTGTTCATAATTCTTCTTCTGCTGCCTCTGATTCCTTCCATCATTGCT CTCATTCGCAGCAGCCGGTGA
AA sequence Show only first row Show all	>Lus10018441 pacid=23162189 polypeptide=Lus10018441 locus=Lus10018441.g ID=Lus10018441.BGIv1.0 annot-version=v1.0 MNDLLSSSFKKYSDLRQQSQTDDLEAGNSNSNLDKFFQDVESVKDDMKSVEKMYKSIQEANEECKVLHNAKSVKAMRAKMDADVGQVLKRVKLIKGKLEA LERSNAAARSIAGCGPGSSADRTRTSVVGGLGKKLKDLMDDFQNLRAKMSAEYKETVERRYYTITGEKASEDLIDDLISSGESESFLQKAIQEQGRGQIL DTISEIQERHDGVKEIEKNLIELHQVFLDMAALVEAQGHQLNDIESHVMHASSFVHRGTEQLQEAREYQKSSRKWTCYAIILGLVFIILLLLPLIPSIIA LIRSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G61290		ATSYP124, SYP12...	syntaxin of plants 124 (.1)		Lus10018441 [exp]	0	1
					Lus10037199 [exp]	1.4	0.8502
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Lus10009021 [exp]	1.4	0.8872
					Lus10009449 [exp]	6.7	0.7408
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	6.9	0.8206
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	8.0	0.8206
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	8.9	0.8206
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027896 [exp]	9.4	0.7677
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030458 [exp]	9.5	0.7821
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	9.8	0.8124
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	10.9	0.8097

Compare expression of checked genes

Lus10018441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.