Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05000 364 / 7e-130 VPS28-2, VPS28-1 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) AT4G21560 357 / 2e-127 VPS28-1 vacuolar protein sorting 28, vacuolar protein sorting-associated protein 28 homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011243 [exp] 393 / 3e-141 AT4G05000 383 / 1e-137 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Lus10027229 [exp] 52 / 2e-08 AT4G21380 54 / 7e-09 receptor kinase 3 (.1) Lus10027228 [exp] 0 / 1 AT4G05000 126 / 1e-50 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035500 [exp] 384 / 1e-137 AT4G05000 366 / 8e-131 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2) Potri.011G043800 [exp] 374 / 7e-134 AT4G05000 364 / 7e-130 vacuolar protein sorting-associated protein 28 homolog 1, Vacuolar protein sorting-associated protein VPS28 family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF03997 [flax] [poplar] VPS28 VPS28 protein
Representative CDS sequence Show only first row Show all	>Lus10018442 pacid=23162195 polypeptide=Lus10018442 locus=Lus10018442.g ID=Lus10018442.BGIv1.0 annot-version=v1.0 ATGGAGGTCAAGCTATGGAGCGACAAGAGAGAGCGCGAGATGTACGAGAACTTCGCGGAGCTCTACGCGATAATCAAGGCCACTGAGAAGCTCGAGAAGG CTTATGTCCGCGACGTCATCTCCTCATCAGAGTATGAGTCTGAATGCCAGAAGCTCATCGCTCATTTCAAGACGCTCTCCTCAAGCTTAAAGGACACGAT TCCGAGCATCGAGAGGTTTGCAGACACCTACAAGATGGACTGCCCTGCAGCCATTAACCGGCTCGTGATATCTGGTGTTCCTGCCACGGTGGAACACAGG ACCGCGGTGGCTGCATCTTCGACTACATCGGCTGCAACGGTCGCTGAGTGTGTGCAGAACTTCATCACGGCTATGGATTCGTTGAAGCTGAACATGGTTG CTGTCGACCAGGTGCATCCTTTGTTGTCGGATCTATCGGCTTCGCTTAACAAACTCAGCATCTTGCCACCTGATTTCGAAGGGAAGATCAAGATGAAGGA GTGGATTTCGAGGCTGGCTAAGATGGGGGCGTCTGATGAGCTGACTGAGCAGCAGTCTAGGCAGCTTCACTTCGATCTCGAGTCCTCGTACAACTCGTTC ATGGCTGCTTTGCCTAGCTCCGGTACATGA
AA sequence Show only first row Show all	>Lus10018442 pacid=23162195 polypeptide=Lus10018442 locus=Lus10018442.g ID=Lus10018442.BGIv1.0 annot-version=v1.0 MEVKLWSDKREREMYENFAELYAIIKATEKLEKAYVRDVISSSEYESECQKLIAHFKTLSSSLKDTIPSIERFADTYKMDCPAAINRLVISGVPATVEHR TAVAASSTTSAATVAECVQNFITAMDSLKLNMVAVDQVHPLLSDLSASLNKLSILPPDFEGKIKMKEWISRLAKMGASDELTEQQSRQLHFDLESSYNSF MAALPSSGT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G05000		VPS28-2, VPS28-...	vacuolar protein sorting-assoc...		Lus10018442 [exp]	0	1
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10031048 [exp]	1.0	0.8811
AT4G35980			unknown protein		Lus10041889 [exp]	2.8	0.8774
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	3.5	0.8767
AT2G36900		ATMEMB11, MEMB1...	membrin 11 (.1.2)		Lus10005690 [exp]	3.5	0.8757
					Lus10024821 [exp]	6.5	0.8563
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10008953 [exp]	9.2	0.8423
AT1G27695			glycine-rich protein (.1.2)		Lus10032855 [exp]	9.4	0.8509
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	9.5	0.8585
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	10.2	0.8555
AT4G13530			unknown protein		Lus10003531 [exp]	10.6	0.8546

Compare expression of checked genes

Lus10018442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.