Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54310 264 / 4e-83 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 205 / 2e-63 AGD15 ARF-GAP domain 15 (.1) AT4G05330 102 / 5e-24 AGD13 ARF-GAP domain 13 (.1) AT4G21160 101 / 1e-23 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT5G13300 103 / 3e-23 AGD3, VAN3, SFC ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) AT3G07940 97 / 9e-22 Calcium-dependent ARF-type GTPase activating protein family (.1) AT5G61980 98 / 1e-21 AGD1 ARF-GAP domain 1 (.1) AT3G53710 97 / 2e-21 AGD6 ARF-GAP domain 6 (.1.2) AT5G46750 96 / 3e-21 AGD9, AGD8 ARF-GAP domain 9 (.1) AT4G17890 94 / 1e-20 UBP20, AGD8 ARF-GAP domain 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011238 [exp] 767 / 0 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 242 / 9e-75 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 201 / 2e-61 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10037882 [exp] 133 / 4e-34 AT5G54310 344 / 4e-114 NEVERSHED, ARF-GAP domain 5 (.1) Lus10039538 [exp] 101 / 1e-22 AT3G07940 490 / 4e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10024165 [exp] 100 / 1e-22 AT3G07940 491 / 1e-171 Calcium-dependent ARF-type GTPase activating protein family (.1) Lus10001799 [exp] 100 / 3e-22 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10000903 [exp] 97 / 1e-21 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004562 [exp] 97 / 1e-21 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044100 [exp] 322 / 8e-106 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 303 / 3e-98 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 273 / 9e-86 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 268 / 2e-84 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 221 / 7e-70 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G098500 [exp] 104 / 1e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.001G372000 [exp] 103 / 1e-24 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.T125706 [exp] 105 / 3e-24 AT3G07940 503 / 8e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.003G198301 [exp] 104 / 3e-24 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1) Potri.001G066800 [exp] 103 / 2e-23 AT5G13300 1192 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [flax] [poplar] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Lus10018445 pacid=23162194 polypeptide=Lus10018445 locus=Lus10018445.g ID=Lus10018445.BGIv1.0 annot-version=v1.0 ATGAATCATAAAGCCAACGTTTCCAGGGAGCTCAACGCCAAGCATAGTAAGATATTGGAAGGGCTGCTTAAGTTAGCTGAGAACAGAGAATGTGCGGATT GTAAAAGCAAGGGTCCGAGATGGGCTAGTGTGAACCTGGGAATCTTCATATGCATGCAATGCTCAGGGATCCATAGAAGCCTTGGAGTACACATTTCTCA GGTAAGGTCTGCAACATTAGACACATGGCTGCCAGACCAGATCTCTTCCATCCAATCTATGGGGAATGAGAGATCAAACAGTTACTGGGAATCAGAGCTG CCTCCTAATTATGACAGAGTTGGGATTGAGAACTTCATCCGGGCCAAGTATGTCGACAGAAGATGGGTCCCAAGGGACGGGAAACCAAGATCGATTCCTG GAGTTCGGAGTAGTGAGCTGAGTCGTCAACAGGTAGCTGCTAGAAGTGATTATGATCGGAAATTAGCTCCTCCCCCGGCTGCCAATGGAATTGTTCATGT TCCCAAGTGTTCGAGTCCTGAGTCGGTTAAGGTTGCAACTAAGAGTAGTACTACTCTGGAGCCGGTTAAAATTGTCCAGCAGGTAAATGCAGTTTCCTCC GTGGGCAATCTTAATGGACATATTGCTGCTCATGATGCAAAACCACCGCCAGCACAAGAAAAACCAGTTATAAACACTGAACCAACAGTATCAAGGCTAG AATTGCCTAAGAAGGAAGCAACTCCACCGAAAAAAGTGGACTATGCAACTGAGCTTTTCAATTTACTCTGCATGGATGATGATTCCTCTACAGCAAATGG CTCGAACTCGAACACCTGGAGTACTGGAACTAACCCTCATCAGTCCATGGCTCAACCATCTCAACAAGAGCAACACACCAAGGGAAAGCCTAACTTGGTC ACTTCACTTCCCATTCCTCAACAGCAACAACAGCCATTCCAAATACCTTACTCAACAAGCTCAAATGGAGGGCACCAAGTTTCACACAGCAATGGACATT CAATCAGTTCCAATGGAGTTCAGTTTTCTCAACAGCATTGGCAAGGAACTCCTGCCCATCAGGTCCCTCCAAGCATGCCAATTCCTGCTGCTGATCATCC CGGAAAATACATTCATCAGGTTGAACACAACCCACAGATGTACCCAAATGGGAACTCCTTCACTCCCCCCACATCGAGTGTGTATGGGCAAGGGCCGATC GACGAGATGAATGGCGTGCCGCAAGTAATGCATCATCATCAAGCTCAAACTCAGAATGGATATCCAATGGTGGTTCCAGTGACTGTAGGAAATCAGCAGC AAGCAGGTTATTATTATGATCTGTCCTTGTTAACACCAGCAGTATATAAGAAATGGTGA
AA sequence Show only first row Show all	>Lus10018445 pacid=23162194 polypeptide=Lus10018445 locus=Lus10018445.g ID=Lus10018445.BGIv1.0 annot-version=v1.0 MNHKANVSRELNAKHSKILEGLLKLAENRECADCKSKGPRWASVNLGIFICMQCSGIHRSLGVHISQVRSATLDTWLPDQISSIQSMGNERSNSYWESEL PPNYDRVGIENFIRAKYVDRRWVPRDGKPRSIPGVRSSELSRQQVAARSDYDRKLAPPPAANGIVHVPKCSSPESVKVATKSSTTLEPVKIVQQVNAVSS VGNLNGHIAAHDAKPPPAQEKPVINTEPTVSRLELPKKEATPPKKVDYATELFNLLCMDDDSSTANGSNSNTWSTGTNPHQSMAQPSQQEQHTKGKPNLV TSLPIPQQQQQPFQIPYSTSSNGGHQVSHSNGHSISSNGVQFSQQHWQGTPAHQVPPSMPIPAADHPGKYIHQVEHNPQMYPNGNSFTPPTSSVYGQGPI DEMNGVPQVMHHHQAQTQNGYPMVVPVTVGNQQQAGYYYDLSLLTPAVYKKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	0	1
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	3.7	0.8701
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	3.7	0.8907
AT5G61530			small G protein family protein...		Lus10042986 [exp]	6.0	0.8533
AT5G01800			saposin B domain-containing pr...		Lus10014162 [exp]	6.7	0.8615
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	7.3	0.8372
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	9.3	0.8284
AT1G01770			unknown protein		Lus10014782 [exp]	16.9	0.8130
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	17.9	0.8441
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	18.7	0.8403
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10041253 [exp]	19.7	0.8095

Compare expression of checked genes

Lus10018445 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.