Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011210 [exp] 76 / 4e-16 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10016866 [exp] 74 / 2e-15 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10022939 [exp] 73 / 3e-15 AT1G52490 56 / 2e-08 unknown protein Lus10022937 [exp] 73 / 3e-15 AT1G52490 56 / 2e-08 unknown protein Lus10011197 [exp] 61 / 4e-11 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 61 / 5e-11 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10011237 [exp] 61 / 6e-11 AT2G28470 901 / 0.0 beta-galactosidase 8 (.1.2) Lus10015432 [exp] 56 / 3e-09 ND 37 / 2e-05 Lus10007277 [exp] 54 / 2e-08 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018446 pacid=23162160 polypeptide=Lus10018446 locus=Lus10018446.g ID=Lus10018446.BGIv1.0 annot-version=v1.0 ATGCATGCGCAAAATGCCCTTGACCTTCGAGCCTCAGCTCGGGTTGTTCACTGGTTTTTGCTCAACAGCAGGGGAAAGATATTCTACAAAAACGTGACAG TGAGTTCTTTCACGATTTCTAAGGGAGGGTATTCCTTGGATTTCAAACTTGCTGAAATTCTTGTTTATCCTGTTGTAAGAGTAAAAGCGTGCAAACCCTA CATGCCTCTGCTTCATCTCGTTCGATGTATGGGATTCCAAGATAATCTGGTCTTTCCCAGTACCCCGCCGCCGGAGCTTTCTTCCGTCCACCACCTCATA TCGGTGGTTCGGTTCTTCCTCCGCTCCACCTTACTTCATGACCTCCCCTGTATCTCCCCTGCCTCTCAAATCACCGCAGTGCCCCTTAGGATTACCGAGG CTAGCGAAGTTGATCGTGGAAATGCGGGTCTCTGCTTCACACCAAAGCCGAACTTTAGGACTCCGAGACGCAATGAGCTCAACATTGGAAATGCGGGTCT CTGCCGTCTTTACTTGCCCTTCGACCGACTAACTCGAGCTAAAACCATATAG
AA sequence Show only first row Show all	>Lus10018446 pacid=23162160 polypeptide=Lus10018446 locus=Lus10018446.g ID=Lus10018446.BGIv1.0 annot-version=v1.0 MHAQNALDLRASARVVHWFLLNSRGKIFYKNVTVSSFTISKGGYSLDFKLAEILVYPVVRVKACKPYMPLLHLVRCMGFQDNLVFPSTPPPELSSVHHLI SVVRFFLRSTLLHDLPCISPASQITAVPLRITEASEVDRGNAGLCFTPKPNFRTPRRNELNIGNAGLCRLYLPFDRLTRAKTI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10018446 [exp]	0	1
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	2.0	0.8391
AT1G32730			unknown protein		Lus10011037 [exp]	2.6	0.7945
AT5G65090		DER4, MRH3, BST...	DEFORMED ROOT HAIRS 4, BRISTLE...		Lus10041708 [exp]	2.8	0.8270
					Lus10001825 [exp]	5.1	0.8937
AT2G41970			Protein kinase superfamily pro...		Lus10017242 [exp]	9.5	0.8300
AT1G53440			Leucine-rich repeat transmembr...		Lus10030626 [exp]	12.5	0.6915
AT3G24130			Pectin lyase-like superfamily ...		Lus10007136 [exp]	12.6	0.6796
AT5G02220			unknown protein		Lus10001570 [exp]	14.7	0.7488
AT5G15110			Pectate lyase family protein (...		Lus10030791 [exp]	15.7	0.8149
					Lus10037868 [exp]	17.7	0.7886

Compare expression of checked genes

Lus10018446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.