Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21570 464 / 1e-166 Protein of unknown function (DUF300) (.1) AT1G11200 454 / 1e-162 Protein of unknown function (DUF300) (.1) AT1G77220 126 / 7e-33 Protein of unknown function (DUF300) (.1) AT5G26740 122 / 6e-32 Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2), Protein of unknown function (DUF300) (.3) AT3G05940 116 / 9e-30 Protein of unknown function (DUF300) (.1) AT4G38360 115 / 4e-29 LAZ1 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) AT1G23070 95 / 5e-22 Protein of unknown function (DUF300) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011236 [exp] 263 / 9e-90 AT4G21570 216 / 1e-71 Protein of unknown function (DUF300) (.1) Lus10001426 [exp] 117 / 7e-30 AT3G05940 674 / 0.0 Protein of unknown function (DUF300) (.1) Lus10001058 [exp] 117 / 7e-30 AT3G05940 675 / 0.0 Protein of unknown function (DUF300) (.1) Lus10028621 [exp] 51 / 4e-07 AT1G77220 316 / 2e-103 Protein of unknown function (DUF300) (.1) Lus10018920 [exp] 51 / 4e-07 AT1G77220 316 / 5e-104 Protein of unknown function (DUF300) (.1) Lus10022625 [exp] 50 / 5e-07 AT4G38360 296 / 7e-102 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Lus10035832 [exp] 46 / 2e-05 AT1G23070 205 / 6e-63 Protein of unknown function (DUF300) (.1) Lus10003321 [exp] 44 / 0.0001 AT4G38360 321 / 2e-106 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G035900 [exp] 481 / 2e-173 AT1G11200 436 / 1e-155 Protein of unknown function (DUF300) (.1) Potri.011G044200 [exp] 474 / 1e-170 AT1G11200 395 / 1e-139 Protein of unknown function (DUF300) (.1) Potri.001G405700 [exp] 451 / 1e-161 AT4G21570 421 / 2e-149 Protein of unknown function (DUF300) (.1) Potri.002G071400 [exp] 129 / 4e-34 AT1G77220 753 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G188200 [exp] 129 / 5e-34 AT1G77220 756 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000600 [exp] 117 / 6e-30 AT3G05940 622 / 0.0 Protein of unknown function (DUF300) (.1) Potri.004G204600 [exp] 117 / 9e-30 AT4G38360 713 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.009G165600 [exp] 116 / 3e-29 AT4G38360 717 / 0.0 LAZARUS 1, Protein of unknown function (DUF300) (.1), Protein of unknown function (DUF300) (.2) Potri.018G062600 [exp] 108 / 1e-26 AT1G23070 522 / 0.0 Protein of unknown function (DUF300) (.1) Potri.005G000300 [exp] 67 / 1e-12 AT3G05940 311 / 2e-105 Protein of unknown function (DUF300) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03619 [flax] [poplar] Solute_trans_a Organic solute transporter Ostalpha
Representative CDS sequence Show only first row Show all	>Lus10018447 pacid=23162108 polypeptide=Lus10018447 locus=Lus10018447.g ID=Lus10018447.BGIv1.0 annot-version=v1.0 ATGGATTTCTCGAACTTCAGTCGAGGTCAGATCACCATTATGGGAACGGGATTGAGTGTGATGCTGACGATGCACTTCACGGTGCAGTTAGTATCACAGC ATCTATTCTACTGGAAGAACCCCAAGGAGCAGAAGACCATCATCATTATCCTCCTCATGGCTCCTATATATGCTATCGTGTCGTTCGTAGGGTTATTGGA TATCCGTGGAAGCGAAGCTTTCTTCATGTTCTTGGAATCAATCAAGGAGTGTTATGAAGCCTTGGTGATCGCCAAGTTCTTGGCTTTGATGTACAGTTAC CTGAACATATCCATGAGCAAAAACATCGTTCCGGATGAGATTAAAGGAAGAGAGATTCACCATTCCTTCCCAATGACACTTTTCCAGCCTCACACTGTGC GCCTTGACCACCGAAACCTGAAGCTCCTAAAGCTCTGGACTTGGCAGTTCGTCGTCATTCGCCCAGTATTTTCCGTCTTGATGATAACTCTGCGGATTCT CCAGATCTACCCGTCATGGTTGAGCTGGACATTCACCATAATCCTTAACGTCTCCGTTTCTCTAGCACTGTACTCCCTCGTCATCTTCTACCACGTCTTT GCGAAGGAGCTCGCACCCCATAGTCCACTTGCCAAGTTCATGTGCATCAAAGGGATCGTCTTCTTTTGCTTCTGGCAGGGCATAGTGCTGAGTGCGCTCG TAGCGATGGGGGTCATCAAGTCACACCATTACTGGCTAGATGTGGAGCATCTAGAAGAAGCTTTCCAGAACATCCTCGTCTGCTTAGAGATGGTAGTCTT CGCCATGCTCCAGCAATACGCGTACCCTGTAACCCCTTACAGTGGAGACGTGCAGGCCAAGCTTAAGATGAACAAGAAGAACGAATGA
AA sequence Show only first row Show all	>Lus10018447 pacid=23162108 polypeptide=Lus10018447 locus=Lus10018447.g ID=Lus10018447.BGIv1.0 annot-version=v1.0 MDFSNFSRGQITIMGTGLSVMLTMHFTVQLVSQHLFYWKNPKEQKTIIIILLMAPIYAIVSFVGLLDIRGSEAFFMFLESIKECYEALVIAKFLALMYSY LNISMSKNIVPDEIKGREIHHSFPMTLFQPHTVRLDHRNLKLLKLWTWQFVVIRPVFSVLMITLRILQIYPSWLSWTFTIILNVSVSLALYSLVIFYHVF AKELAPHSPLAKFMCIKGIVFFCFWQGIVLSALVAMGVIKSHHYWLDVEHLEEAFQNILVCLEMVVFAMLQQYAYPVTPYSGDVQAKLKMNKKNE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21570			Protein of unknown function (D...		Lus10018447 [exp]	0	1
AT1G52080		AR791	actin binding protein family (...		Lus10025846 [exp]	4.2	0.8933
AT1G30090			Galactose oxidase/kelch repeat...		Lus10028121 [exp]	10.4	0.8841
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	11.0	0.8935
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	15.8	0.8760
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	17.5	0.8924
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10039320 [exp]	21.6	0.8739
AT5G47740			Adenine nucleotide alpha hydro...		Lus10002238 [exp]	22.4	0.8466
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	27.6	0.8869
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	32.6	0.8846
AT1G80290			Nucleotide-diphospho-sugar tra...		Lus10020174 [exp]	33.4	0.8630

Compare expression of checked genes

Lus10018447 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.