Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28430 892 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011235 [exp] 1480 / 0 AT3G28430 1015 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140800 [exp] 1033 / 0 AT3G28430 1019 / 0.0 unknown protein Potri.006G073600 [exp] 843 / 0 AT3G28430 950 / 0.0 unknown protein Potri.006G204600 [exp] 216 / 2e-59 AT3G28430 285 / 3e-84 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09758 [flax] [poplar] FPL Uncharacterised conserved protein
Representative CDS sequence Show only first row Show all	>Lus10018448 pacid=23162178 polypeptide=Lus10018448 locus=Lus10018448.g ID=Lus10018448.BGIv1.0 annot-version=v1.0 ATGTGGTTCTCGTTCTGGAAATCCAGAGATCGATTCTCCTTGGATGAGCTCAGATATTTAACAGATCAGCTGCAGAAAGTGAGAGTTGTAAATGAGGTCA ATAAGGATTTTGTTGTTGAGGCATTGAGATCAATATCTGAGTTGATAACTTATGGAGACCAGCACGATTCAAGCTTTTTTGAGTTTTTTATGGAGCAGCA AGTCATGGGAGAGTTTGTAAGAATAATAAAGCTATGCAAATCTATGACCATTTCACTTCAGCTACTCCAGTCAATGAGTATTATGATCCAGAACCTTAGA ACAGAGCATGCTATATACATTGTTTCTTTTCCACTATATGTTGAGGCCATCCGGTTTGCTTTCCATCAAGAGAGTATGATCCGCACTGCAGTACGTGCCT TGACACTTAATGTTTACCATGTTGGAGATGGACCTGTGAATAGATTTGTGAGCAAGGCCCCGTATGACCGTTATTTTACAGAGTTGATATCATTTTTCCG CAAGCAATGTATTGATTTAAATGGAATGATCTCTGAAAGCCCACAAACAATAGATCCAGACAGGACCACTGCAATTCTTGCTGCGGTTGATGAAATTGAA GACAACCTCTACTATTTCAGCGATGTTATATCTGCTGGAATTCCTGATGTTGGGAGGTTGATAACTGACAACATTCTGCAACTTTTGATACTTCCTTTGC TTCTTCCGTCTTTGCGGTTAGATGCTGTTAATGTTCCGCCGATTGCTCCTGTCACTTCTCTGTATCTTCTCTGCTGCATTTTACGCATTGTTAAAATTAA GGATTTGGCGAACGCCATTGCTGCTGCACTGTTCTGTCCACTGGAGGCTTTTCTTCCATATGCAGAAGCTAAAGTCAATGGTCATGTGGCTAGTAACAAC GGACATAAGAGCTTCCATCAGTTGGAAAATAATAACACAACCACAGTTGATGAACTTGCTAGAGTAGTTTCAAACTTGTCAACTTCTTCACAAGTTTACC CTGAAGACCTTGTGACGCAATTTGATTGCAGTAAATCTTTATATGCTCTCAGGGACGTGCTGCTATCTTATGTTGTAAGTGGAAATAGCCAACAGGTTCT GGGTTCATTGAATGTGCTAGCTACATTGTTGCAAACAAAAGTTATTGCAGAATTGGATGAAGCAATGCTCGATGCTCTCGGCATTCTGCCCCAAAGAAAA CAACACAAGAAACTCTTGTTGGCAAGTGGTGTAGAGCTTTCCTCTTTGGTTGGTGAAGGGTTAGGGGAAGAGCAACTTTTTTCGCCAGAGAGCTCTACAA GAGATGGGATTGGTGGGTACCTACAAAGGCTCAAGGATGAATATGGGGTAGCGTGTTCCTCCTCAGAACTTGGGACGAGCTCTCGTGCACATAGATTTCA GGTTCTGGATTCGTTGGTGAGTCTTTTCTGCCGGCCAGGCATTCCTGCGGAGATATTATGGGATGGGGGTTGGCTTTTGCGTCAACTACTTCCTTATAGC GGGGCGGAGTTCAACAGCCAGCACCTTAGATTGCTGAAAGACTCGTACAGAGAGTGCAGCAATGCTCTTATAAAAGAGACAAGGGGCACTTGGCTGGATC TGCTCATAACGGTATTGAGCGATGAGTGGAAAAAATGCAAGCGAGCAATCGAGGCTTCGTCTCCAAGGAAGGAGCCAAAATGCATGCTTTTGCCTCCCCG GAAGTCTTCTTCTGACGATGAGCGCAATGAATCATCCGTCTCCTACGGAGAAAAAATGTGTGAGCTAGTGAAGGCGTTTGTGCTTCTTCATCAACTTCAA ATTTTCTCCCTTGGTAGGGCTTCGCCCGAGCAGGCTCCGGTCCACCCGCCTTCCGATTTACCCGGAGCTTCTCGTGCAAAGACTGCTGGCATCGATGGTT CCATTCCCAAACCAGGAACCGAGTTACGACTAGTCGATTCTGTGCCTTGTCGGATTGCGTTCGAGAGGGGTAAAGAACGTCATTTCTCCTTTCTAGCATT ATCCGTCGGCATTTCGGGGTGGATACTCCTCTTGGAAGAGTCCCCTTTGAAGCAGCAGTATGGCGTCGTTCGTGTCACCGCCCCGTTGGCCGGTTCGAAT CCAAGAATCGACGAGAAGCACGCCAAATGGCTACATTTACGGATACGTCCATCCACTCTACCCTCTGTCGATCCCGGACGACCTTCCCCAAACCTACCTA AACCCAAGGCGAAAACTTTGGTCGACGGCCGATGGACCTTAGCATTTCGAGACGAGGAATCCTGCAAGCGCGCTTACTCCATGCTCGTCGAGGAGATCAA CTTGCAAAGCAACGAGGTCGAGAGAAGGCTAAGACCGATGCTTAATCTCGACGAGACCCCCGAAGACAACCCGTTCCCTCCTTCGGTCTCTTCCTCTAGT GTTTCGTCGACCACGTTAAGCACAAGCACATAA
AA sequence Show only first row Show all	>Lus10018448 pacid=23162178 polypeptide=Lus10018448 locus=Lus10018448.g ID=Lus10018448.BGIv1.0 annot-version=v1.0 MWFSFWKSRDRFSLDELRYLTDQLQKVRVVNEVNKDFVVEALRSISELITYGDQHDSSFFEFFMEQQVMGEFVRIIKLCKSMTISLQLLQSMSIMIQNLR TEHAIYIVSFPLYVEAIRFAFHQESMIRTAVRALTLNVYHVGDGPVNRFVSKAPYDRYFTELISFFRKQCIDLNGMISESPQTIDPDRTTAILAAVDEIE DNLYYFSDVISAGIPDVGRLITDNILQLLILPLLLPSLRLDAVNVPPIAPVTSLYLLCCILRIVKIKDLANAIAAALFCPLEAFLPYAEAKVNGHVASNN GHKSFHQLENNNTTTVDELARVVSNLSTSSQVYPEDLVTQFDCSKSLYALRDVLLSYVVSGNSQQVLGSLNVLATLLQTKVIAELDEAMLDALGILPQRK QHKKLLLASGVELSSLVGEGLGEEQLFSPESSTRDGIGGYLQRLKDEYGVACSSSELGTSSRAHRFQVLDSLVSLFCRPGIPAEILWDGGWLLRQLLPYS GAEFNSQHLRLLKDSYRECSNALIKETRGTWLDLLITVLSDEWKKCKRAIEASSPRKEPKCMLLPPRKSSSDDERNESSVSYGEKMCELVKAFVLLHQLQ IFSLGRASPEQAPVHPPSDLPGASRAKTAGIDGSIPKPGTELRLVDSVPCRIAFERGKERHFSFLALSVGISGWILLLEESPLKQQYGVVRVTAPLAGSN PRIDEKHAKWLHLRIRPSTLPSVDPGRPSPNLPKPKAKTLVDGRWTLAFRDEESCKRAYSMLVEEINLQSNEVERRLRPMLNLDETPEDNPFPPSVSSSS VSSTTLSTST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G28430			unknown protein		Lus10018448 [exp]	0	1
AT1G50120			unknown protein		Lus10013430 [exp]	1.0	0.8310
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	1.4	0.8234
AT1G20670			DNA-binding bromodomain-contai...		Lus10013220 [exp]	2.0	0.7689
AT1G15780			unknown protein		Lus10025452 [exp]	3.0	0.7736
AT1G15780			unknown protein		Lus10015323 [exp]	8.9	0.7670
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	9.6	0.7029
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	14.8	0.7430
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	20.5	0.7651
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	23.5	0.7133
AT1G20670			DNA-binding bromodomain-contai...		Lus10030739 [exp]	24.0	0.7204

Compare expression of checked genes

Lus10018448 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.