Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22300 266 / 4e-86 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44320 230 / 4e-72 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44300 225 / 2e-70 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44310 219 / 4e-68 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT2G27450 50 / 2e-06 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 44 / 0.0001 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011234 [exp] 697 / 0 AT5G22300 274 / 3e-89 nitrilase 4 (.1) Lus10013313 [exp] 253 / 8e-81 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 253 / 2e-79 AT5G22300 265 / 7e-85 nitrilase 4 (.1) Lus10005201 [exp] 247 / 1e-78 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10011198 [exp] 102 / 4e-26 AT5G22300 62 / 3e-12 nitrilase 4 (.1) Lus10016999 [exp] 76 / 8e-16 AT5G22300 83 / 5e-19 nitrilase 4 (.1) Lus10026464 [exp] 57 / 1e-08 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10020627 [exp] 52 / 3e-07 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10025012 [exp] 42 / 0.0004 AT5G12040 137 / 1e-39 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G074200 [exp] 307 / 9e-101 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 299 / 4e-98 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 254 / 5e-81 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.004G201400 [exp] 51 / 6e-07 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.006G222900 [exp] 47 / 2e-05 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10018449 pacid=23162162 polypeptide=Lus10018449 locus=Lus10018449.g ID=Lus10018449.BGIv1.0 annot-version=v1.0 ATGGCGACGGACGCCGAACCCACCGATGAACAAAAGCCGGCGACGGAGAGTCAGAGTGTCGCCGCCACCGCCGCCGCCGCCTCTCGAATCGAAATTCCGG AGTTCTGCTACTCGGCGATCTCTATCCTCAAACGCGAGCTGCGCCTGGATAGTATTTCTGACGTCGTTCCCTGGCTCCTCGAACAGGTCCGACTTCAGAC GGCCAACGACAACTCCGACGTACCTACATGCAACTCCCCCGCGTCGAAATCGGAGCTTCCGGTTGGAGAAATCTTCATTCCCCGGCCCATACCGCCGCCC AGGCTGCAAAGGGTGAGAGTTACGGTAGCTCAAGCCAGTACAGTGTTATTCGATACTCCTGCAACTCTAGAGAAGGCGGAGAAGATGATTAGCACCGCTG CTGCTCATTCCTCTCGATTGATTGTGTTCCCTGAAGCTTTTATCGGTGGATATCCACAGTTCTTGTTCAACGAATCTTCTGCTGGAGAGGAGGTAAAGAT GAACGATGATGATCTTAAGAAGTATCGTGACTCCGCCATTGATTACCCTGGTCCCGAGGTTGAGAGGCTATCACAAATGGCAATGAAGTACGGGACCAAC ATGGTAATGGGAGTAGTCGAGAGAGCCGGATCGAAGCTCTACAGCACGGTAATCTTCTTCGATTGGCGAGGGAGGCGACTAGGCCACCACAGGAAGCTGT CAATCACATTTCCATCGGAAGCCTCCGCTTGGTCCCCGGGAGAAACCATATCTCCGCTCCCTCTTTACGAGACATCATCCACTGGGAAGATCGGCGGGTT CATCTCATCAGACAATTTGATGCCGCTCTTGAGAAACGGACTGTACGAGAAAGGGATCGAGGTGTACTGCGCTCCGACTGCCGAAGCTGACGAAGCGTGG TTCGATAGTCTGGCCCACATTGCCACAGAAGGCCACTGCTTCGTCCTGTCGGCCAACCAGTTTGTTCGACGGAGGGATAGTTGTAGGCCGAAAGAAAGGA ATGATGACGAGGCGTCGTCGTGGGATAATGCAGTCGTGTCTGCCGGAGGGAGTGTTGTTATCTCGCCGTCGGGGAAGCTCTTAACTGAGGCTAAACACCA TGGAGAATATGTTCTCGTGGCTGATCTTGAACTTGGCAAGATCGCGGCCTCAAAGGTGGAATTCGGTGGCGACTCGACCGGGTTCGGACCGAGCGATGCT GGCTGGACTGTCGGTGCATCAGCAGCGGCTAATCCAGGCTGCTCCGATCAGTTGAGGTGA
AA sequence Show only first row Show all	>Lus10018449 pacid=23162162 polypeptide=Lus10018449 locus=Lus10018449.g ID=Lus10018449.BGIv1.0 annot-version=v1.0 MATDAEPTDEQKPATESQSVAATAAAASRIEIPEFCYSAISILKRELRLDSISDVVPWLLEQVRLQTANDNSDVPTCNSPASKSELPVGEIFIPRPIPPP RLQRVRVTVAQASTVLFDTPATLEKAEKMISTAAAHSSRLIVFPEAFIGGYPQFLFNESSAGEEVKMNDDDLKKYRDSAIDYPGPEVERLSQMAMKYGTN MVMGVVERAGSKLYSTVIFFDWRGRRLGHHRKLSITFPSEASAWSPGETISPLPLYETSSTGKIGGFISSDNLMPLLRNGLYEKGIEVYCAPTAEADEAW FDSLAHIATEGHCFVLSANQFVRRRDSCRPKERNDDEASSWDNAVVSAGGSVVISPSGKLLTEAKHHGEYVLVADLELGKIAASKVEFGGDSTGFGPSDA GWTVGASAAANPGCSDQLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10018449 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	3.0	0.8616
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	3.7	0.8499
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	10.9	0.8192
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	11.0	0.8447
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	12.0	0.8233
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	13.0	0.8423
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	14.8	0.8292
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	15.9	0.8055
					Lus10018215 [exp]	22.3	0.8126
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10003325 [exp]	24.7	0.8009

Compare expression of checked genes

Lus10018449 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.