Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21585 408 / 2e-144 ENDO4 endonuclease 4 (.1) AT4G21600 365 / 1e-127 ENDO5 endonuclease 5 (.1) AT4G21590 358 / 1e-124 ENDO3 endonuclease 3 (.1.2) AT1G68290 323 / 7e-111 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT1G11190 294 / 2e-99 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011232 [exp] 462 / 2e-161 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10034336 [exp] 305 / 1e-103 AT1G68290 391 / 5e-138 endonuclease 2 (.1) Lus10018452 [exp] 301 / 4e-102 AT1G11190 440 / 3e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10041437 [exp] 263 / 8e-88 AT1G68290 327 / 2e-113 endonuclease 2 (.1) Lus10004191 [exp] 44 / 0.0001 AT3G11840 300 / 2e-95 plant U-box 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044400 [exp] 430 / 5e-153 AT4G21585 448 / 3e-160 endonuclease 4 (.1) Potri.010G123500 [exp] 311 / 2e-106 AT1G68290 412 / 1e-146 endonuclease 2 (.1) Potri.011G044500 [exp] 297 / 2e-100 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [flax] [poplar] PhosC-NucP1 PF02265 [flax] [poplar] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Lus10018451 pacid=23162167 polypeptide=Lus10018451 locus=Lus10018451.g ID=Lus10018451.BGIv1.0 annot-version=v1.0 ATGAGCTCTACTTCCGCGCTGCTGTGGATCGGGAGAGCTATCCTACTCCTCCAATTCGTCACCGGAGCTCTCAGCTGGGGGAAAGAAGGTCACTACGCCG TTTGCAAGATCGCTGAGGCTAGTATACTTCTTTTTGCGTATCTGAATGAAGATGCAGCTGCAGCTGTGAACGAGCTGTTACCGGAGTACGCCAACGGCGA TCTGGCGAGCCTCTGCTCTTGGCCCGACAACATCAAGTGGCAGTACCGGTACCGGTGGAGCAGCCCTCTTCACTACGTCGATACGCCGGACTTCCTGTGC AACTATGAGTTCTCCAGAGATTGTCATGATTCTTCCGGCCATAGAAACGCATGTGTGGTTGCAGCAATCTACAACTACACTGACCAGATCTCATCGGAAT ATCATAATCCTGGAGCAGTGACCAGCTATAATCTGACTGAAGCACTGTTGTTCTTATCACATTTCATTGGTGACATCCATCAGCCCTTGCATGTTGGTTT TGTTGGAGATGAGGGTGGAAACACAATCATAGTTCACTGGTACACTAGAAAGGCTAATCTACACCATGTTTGGGACACCAGCATCATAGAATCGGCCATG AGTACGTTCTATGATTCGGATCTCACAACGATGATTAAATCCATTAGGAGTAATATAACGGACAATGAGCTGCCGTTATGGGGAGACTGCAGAGACAATA AAACCGTTTGTCCAAATCTGTTTGCTTCTGAAAGCATCAGTTTGGCATGCAAGTATGCATACAGGAATGCTACACCCGGAAGCACTCTCAAAGATGATTA CTTCCTCTCTCGGCTACCTATCGTGGAAGAAAGGCTTGCCCAAGCCGGAGTTCGTTTGGCTGCTTCCCTCAACCGAATCTTTACTCCCAAAGTAAAAACT GCACGAATGGCCGTCTCATGA
AA sequence Show only first row Show all	>Lus10018451 pacid=23162167 polypeptide=Lus10018451 locus=Lus10018451.g ID=Lus10018451.BGIv1.0 annot-version=v1.0 MSSTSALLWIGRAILLLQFVTGALSWGKEGHYAVCKIAEASILLFAYLNEDAAAAVNELLPEYANGDLASLCSWPDNIKWQYRYRWSSPLHYVDTPDFLC NYEFSRDCHDSSGHRNACVVAAIYNYTDQISSEYHNPGAVTSYNLTEALLFLSHFIGDIHQPLHVGFVGDEGGNTIIVHWYTRKANLHHVWDTSIIESAM STFYDSDLTTMIKSIRSNITDNELPLWGDCRDNKTVCPNLFASESISLACKYAYRNATPGSTLKDDYFLSRLPIVEERLAQAGVRLAASLNRIFTPKVKT ARMAVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21585		ENDO4	endonuclease 4 (.1)		Lus10018451 [exp]	0	1
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10027948 [exp]	4.8	0.8562
AT3G17300		EMB2786	unknown protein		Lus10037835 [exp]	6.7	0.8880
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	8.7	0.8813
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	11.4	0.8642
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	12.6	0.8612
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Lus10004922 [exp]	13.1	0.8828
AT3G59800			unknown protein		Lus10008338 [exp]	13.1	0.8400
AT2G37195			unknown protein		Lus10026508 [exp]	15.6	0.8531
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	17.0	0.8525
AT1G54650			Methyltransferase family prote...		Lus10006576 [exp]	20.5	0.8823

Compare expression of checked genes

Lus10018451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.