Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11190 441 / 2e-157 ENDO1, BFN1 ENDONUCLEASE 1, bifunctional nuclease i (.1) AT4G21585 317 / 1e-108 ENDO4 endonuclease 4 (.1) AT1G68290 305 / 3e-104 ENDO2 ,ENDO 2 endonuclease 2 (.1) AT4G21590 293 / 3e-99 ENDO3 endonuclease 3 (.1.2) AT4G21600 283 / 2e-95 ENDO5 endonuclease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011232 [exp] 594 / 0 AT1G11190 441 / 6e-153 ENDONUCLEASE 1, bifunctional nuclease i (.1) Lus10018451 [exp] 300 / 6e-102 AT4G21585 408 / 2e-144 endonuclease 4 (.1) Lus10034336 [exp] 289 / 1e-97 AT1G68290 391 / 5e-138 endonuclease 2 (.1) Lus10041437 [exp] 249 / 2e-82 AT1G68290 327 / 2e-113 endonuclease 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G044500 [exp] 505 / 0 AT1G11190 440 / 5e-157 ENDONUCLEASE 1, bifunctional nuclease i (.1) Potri.011G044400 [exp] 307 / 5e-105 AT4G21585 448 / 3e-160 endonuclease 4 (.1) Potri.010G123500 [exp] 290 / 3e-98 AT1G68290 412 / 1e-146 endonuclease 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0368 [flax] [poplar] PhosC-NucP1 PF02265 [flax] [poplar] S1-P1_nuclease S1/P1 Nuclease
Representative CDS sequence Show only first row Show all	>Lus10018452 pacid=23162226 polypeptide=Lus10018452 locus=Lus10018452.g ID=Lus10018452.BGIv1.0 annot-version=v1.0 ATGGCTCTGGCCTTGGTCTTGGTACCTGGAGCTGTGAGTTGGAGCAAGGAAGGTCACATGATCACATGTCGAATTGCGCAGAATCTGTTGGAGCCGGAGG CAAAGCATGCCGTGGAGCAACTTTTGCCGGAAAATGTGAACGGAGACCTGTCAGCACTCTGCGTTTGGCCGGACCAAATCAGGCATTGGTACAGATACAG ATGGACTAGCCCACTTCACTTCATCGACACCCCTGACGATGCCTGCAACTTCGACTATTCGAGGGACTGCGTTAAGGATCGTTGTGTAGCGGGTGCCATC CAAAACTTCACCTCTCAGCTCTCCCACTACAGAGAAGGCAGCACCGATCGACGATACAACTTGACAGAAGCGCTGCTGTTCTTGTCACACTTCATGGGAG ACATTCATCAGCCTATGCACGTCGGCTTCACCACCGACGAAGGTGGCAACACCATCAACCTCCGCTGGTTCCGCCATAAATCCAATCTTCACCACGTATG GGATAGGGAGATCATTCTCACGGCTCTTAAGGATTACTATGACAACGACGTGGATCAACTCCAACAAGCAATTGAAGGAAACTTCACTGACGGAAGTTGG CATGACGACCTGTTGTCTTGGAAAGACTGCAATGATCTTCTTAACTGTCCCAACAAATATGCAGTCGAGAGCATAAACCTAGCTTGCAAATGGGGCTACA AAGGCGTGAAGGACGGTCAAACTCTATCAGATGAATACTTCGAGTCGAGGATGCCGATCGTGATGAAACGCATAGCTCAAGGCGGAGTTCGCTTAGCTAT GTACCTTAACACCCTTTTCGGCGACCCTGAGAAGGCCGAACAAGCAGCTGCATTCGCTACCCCGACGTAG
AA sequence Show only first row Show all	>Lus10018452 pacid=23162226 polypeptide=Lus10018452 locus=Lus10018452.g ID=Lus10018452.BGIv1.0 annot-version=v1.0 MALALVLVPGAVSWSKEGHMITCRIAQNLLEPEAKHAVEQLLPENVNGDLSALCVWPDQIRHWYRYRWTSPLHFIDTPDDACNFDYSRDCVKDRCVAGAI QNFTSQLSHYREGSTDRRYNLTEALLFLSHFMGDIHQPMHVGFTTDEGGNTINLRWFRHKSNLHHVWDREIILTALKDYYDNDVDQLQQAIEGNFTDGSW HDDLLSWKDCNDLLNCPNKYAVESINLACKWGYKGVKDGQTLSDEYFESRMPIVMKRIAQGGVRLAMYLNTLFGDPEKAEQAAAFATPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	0	1
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	2.0	0.8493
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10037495 [exp]	4.6	0.7792
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	4.9	0.8083
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042928 [exp]	5.5	0.7958
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	5.5	0.8204
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	5.7	0.7893
AT5G20610			unknown protein		Lus10021568 [exp]	6.0	0.7577
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10003548 [exp]	6.6	0.7490
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	8.1	0.7857
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	9.2	0.8027

Compare expression of checked genes

Lus10018452 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.